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Detailed information on CNT30727187


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 7e-47

BLAST vs NONCODE:
NONCQUT001608, E-value = 5e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30565197Corchorus capsularisActinidia chinensis25.9317.3581.77203forward
CNT30310235Corchorus capsularisCamelina sativa24.6522.6587.05193forward

Expression of CNT30727187

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

>peptide 2 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

>peptide 3 (41 aa)
MSQCTRTWEVSTWSSSVHRSTLGSCGSYGRRIRATQGNTKFN

>peptide 4 (69 aa)
MSRCTRTWEVSTWSSSVHRSTLGSCGEAWGLVGNETDALHLTLVVESDDSDEGLGVFLLGLLKLLQHLG*

Sequence

>CNT30727187
CACATGAATTTCAAAGATCTCTTAAGATGGAAGAACCATAAGTAAAACAAATACAACCAAGTAAAGCAAATATATAGTTGGAGAACTTAAAATACAGAGA
AAAGGGTTCATAAAATATATGGCAAGGAACTAGTATCTTTATTATTCATTAAGTTCTCAGCCGTTCCATTGGAAATCAAAAACCCAGAATTCAAAAAAAC
AAAGGACAATACCTCAAAAAGAAAGGAAAAGTAAAAAGGTTTCGACAAATGCTAAGTACAATTTAAACAAGCCGAATCCCTACAATGTGGGGAAAACAAC
TCTGTTCATTTAAGCTGAGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGCTTGTTGTCGAATCCAATGATTCTGATGAAG
GACTCGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCAACACCTGGGATGAGTCGGTGCACCCGAACATGGGAAGTTTCCACATGGTCCAGTAGCGTC
CATCGTAGTACCCTGGGGAGCTGTGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGCTTGTTGTCGAATCCGATGATTCTG
ATGAAGGACTCGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCAACACCTGGGATGAGTCAGTGCACCCGAACATGGGAAGTTTCCACATGGTCCAGT
AGCGTCCATCGTAGTACCCTGGGGAGCTGTGGTTCTTACGGTAGACGAATCCGTGCTACACAAGGCAATACCAAATTCAATAT