Detailed information on CNT3072510


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 9e-111

BLAST vs NONCODE:
NONSTUT001005, E-value = 1e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701458Quercus suberQuercus lobata10049.2399.17482forward
CNT3021341Quercus suberCitrullus lanatus92.9556.6483.93448forward
CNT3025169Quercus suberPopulus trichocarpa88.5965.0985.71427forward

Expression of CNT3072510

Peptides detected in this lncRNA

>peptide 1 (38 aa)
GLTPFECCNQLRSFHLPTACQQKSASVGPVGCPLCLGS*

>peptide 2 (53 aa)
MPSLSWILALTLSIVSELSTSKVMVLPVKVLTKICIPPLSRSTRWRVDSFWML*

Sequence

>CNT3072510
GGGTTGACTCCTTTTGAATGTTGTAATCAGCTAAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGGGATGCCCTC
TTTGTCTTGGATCTTAGCTTTGACATTATCAATAGTATCAGAGCTCTCAACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACAAAAATTTGCATT
CCACCTCTGAGCCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCTAGGGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATCA
ACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCTATAGTGTCTGAGCTTTCAACTTCCAAAGTTATGGTCTTCCC
AGTAAGGGTTTTAACAAAGATTTGCATACCACCACGGAGGCGGAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTATAG