Detailed information on CNT3072442


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318007Quercus suberCorylus avellana100.1249.7394.531738reverse complement
CNT30519140Quercus suberJuglans regia99.8359.3593.881733forward
CNT30698389Quercus suberQuercus lobata52.7662.3194.98916reverse complement
CNT30374695Quercus suberArabidopsis thaliana73.1640.6990.791270reverse complement
CNT3021662Quercus suberCitrullus lanatus99.9442.6892.621735forward
CNT30730436Quercus suberCorchorus capsularis81.51100.592.791415forward
CNT30711135Quercus suberGlycine max99.8354.5592.441733forward
CNT3047192Quercus suberPrunus dulcis92.8647.592.061612forward
CNT30312195Quercus suberCamelina sativa97.5267.8891.261693reverse complement
CNT30206613Quercus suberHelianthus annuus72.9372.8492.51266forward
CNT30434075Quercus suberPapaver somniferum10064.6891.241736forward
CNT3027145Quercus suberPopulus trichocarpa67.0571.1594.241164reverse complement

Expression of CNT3072442

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MRLGRMWNSDNWSADRLGAWTDTNCDGGPSPGCSYARGDVVAAIVAGNARLAACLGICALLASACGLPIRPVLKHGPRSLTCVRVKGPENP*

>peptide 2 (38 aa)
MLVETSLPQSWLATRASQRASASARSWHRPAGSPFGPS*

>peptide 3 (40 aa)
MQPQSGGKFRPRLNTGEKPIANKYREGKMKRTLKRESKSA*

>peptide 4 (30 aa)
MCASQRARKPIRRKEADWRDPLEGCTADRP*

>peptide 5 (30 aa)
LLSLSISISGGKETYKDSLSNGERTENSPA*

Sequence

>CNT3072442
TTACTGAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGAGAACAGCCCAGCTTGAGAATCGG
GCGCCCTCACGGGCTTCTCTGAATTGTAGTCTGGAGAAGCGTCCTCAGTGGTGGACCGGGCCCAAGTCCCCTGGAAGGGGGCGCCGGAGAGGGTGAGAGC
CCCGTCATGCCTGGACCCTGTTGCACCACGAGGCGCTGTCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGCTA
AATACGGGTGAGAAACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTTTCGGGAGGGAA
GCGGATGGGGGCCGGCGATGCGCCTCGGTCGGATGTGGAACAGCGACAACTGGTCCGCTGATCGACTTGGGGCGTGGACCGATACGAATTGCGACGGCGG
CCCAAGCCCGGGCTGTAGTTATGCTCGTGGAGACGTCGTTGCCGCAATCGTGGCTGGCAACGCGCGCCTCGCAGCGTGCCTCGGCATCTGCGCGCTCCTG
GCATCGGCCTGCGGGCTCCCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAAAGGGCCAGAAAACCCATAAGGCGTAA
GGAAGCTGATTGGCGGGATCCCCTTGAGGGTTGCACCGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATACCTGTCGGGACCCGAAAA
ATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTAGTGGAGGCCCGCAGCGATACTAACATGCAAATCGTTCGTCTGACTTAGGTATAGGG
GCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCTTCCGAAGTTTCCCTTAGGATAGCTGGAGCCCACGTGCAAGTTCTATCGGGTAAAGCCAATGAT
TAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGACTGCTTCGTTGAGCCGCGCCAAGGAATCGAGAGCT
CCAAGTGGGCCATTTTTGGTAAACAGAACTGGCGATGTGGGATGAACTGGAAGCCGGGTTACGGTGCCTAACTGTGCGCTAACCTAGAACCCACAAAGGG
TGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATCAACTAGTCCTGAAAATGG
ATGGCGCTGAAGCGCGCGACCTATACCCGGCCGTCGGGGCAAGTTCCAGGCCCCAATGAGTAAGTGGGCGCGGCGGTCGCTGCAAAACCTAGGGCACGAG
CCCGGGTGGAGAGGCCGTTGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCTGAAAAGGGGAAAGGTTCCATGTGAACGGC
ACTTGCACATGGGTTAGTCGATCCTAAAAGACGGGGGAAGCCCGTCTGATAGCGTGCTAAGCGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAAT
CGGGACGTGGTGGCTAACGGCAACGTTAGGGAGTCTGGAGACGTCGGCGGGGGCCTCGAGAAAAGTTATCTTTTCTGTTTAACAGCCTGCCCACCCTGGA
AATGGCTCAGCCGGAGGTAGGGTCCAGCGGCTGGAA