« Back to Quercus suber search


Detailed information on CNT3072357


BLAST search results

BLAST vs Swiss-Prot:
sp|P35007|SAHH_CATRO, E-value = 4e-145

BLAST vs NONCODE:
NONBNAT006042, E-value = 1e-131

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Quercus suberSetaria viridis25.853.6487.55265forward
CNT30639580Quercus suberNymphaea colorata19.1843.3981.73197forward
CNT30529934Quercus suberEucalyptus grandis13.9234.2988.11143forward
CNT30517189Quercus suberJuglans regia14.939.3388.89153forward
CNT30702258Quercus suberQuercus lobata28.4362.1397.95292forward
CNT30375086Quercus suberArabidopsis thaliana48.168.984.41494forward
CNT30619260Quercus suberSesamum indicum61.7359.5385.17634forward
CNT3020603Quercus suberCitrullus lanatus40.1226.6189.08412forward
CNT30380073Quercus suberManihot esculenta25.122586.05258forward
CNT30402445Quercus suberBeta vulgaris26.160.3687.69268forward
CNT30200315Quercus suberPisum sativum33.9867.6485.1349forward
CNT30505192Quercus suberNicotiana attenuata13.9225.3183.92143forward
CNT30709695Quercus suberGlycine max22.7870.0691.03234forward
CNT30543653Quercus suberBrassica napus24.7336.8187.8254forward
CNT3076654Quercus suberBrassica juncea35.9379.0186.45369forward
CNT30261371Quercus suberBrassica rapa24.7360.7787.8254forward
CNT30612558Quercus suberArabis alpina31.1684.8886.88320forward
CNT30601056Quercus suberFraxinus excelsior15.6829.7686.34161forward
CNT30607325Quercus suberGossypium raimondii50.6340.3185.96520forward
CNT30231757Quercus suberAnanas comosus13.1551.3386.67135forward
CNT30651401Quercus suberRosa chinensis15.4859.3389.94159forward
CNT30680065Quercus suberTriticum urartu18.8951.1980.93194forward
CNT30365203Quercus suberSorghum bicolor15.3873.4979.75158forward
CNT30355186Quercus suberLactuca sativa32.6245.5284.78335forward
CNT30573685Quercus suberVitis vinifera12.9534.184.21133forward
CNT30705212Quercus suberPrunus avium13.4437.592.03138forward
CNT3021984Quercus suberPopulus trichocarpa30.2814.5487.14311forward
CNT30329805Quercus suberDioscorea rotundata26.4846.3485.29272forward
CNT30151326Quercus suberBrachypodium distachyon13.1533.2583.7135forward
CNT30103876Quercus suberOryza rufipogon25.858.589.43265forward
CNT30578287Quercus suberOryza barthii13.6326.5781.43140forward
CNT30117878Quercus suberOryza nivara25.858.8988.68265forward
CNT30723196Quercus suberLupinus angustifolius55.3171.2786.27568forward

Expression of CNT3072357

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MLQTIALFFIFLMWSTMMMSLLPVVVTKMSASDTTSSRVRTWRPSIRA*

>peptide 2 (33 aa)
MSRPSANTMMPEFVSGKTHLSVWGLMVIRFTPG*

Sequence

>CNT3072357
AAAAAAAAAAGTTATATTGCAAATGAAATAGACCAGAAAGTCTAGAGTAGAGAGCCACCAAATCAAGACAGGAACCTAAGGAAATAACAGTCCTTTTTTT
AGGTTTTAATAACAAATGCAACAAAAACTCAACAGCATTAGCCAGTAATATATTCCCACACAGCCCCATCCAACCCTTATTGAAACCCCAATTGGTCTTC
TTTCAAAAGAGACCAACCAATTTCTTTCCTCCATAACATCCACCACCAAACACAAAAGCCCCTACCAAAAAAAAAATTCAAAACCTAACATCCTAATAAA
AGTCATAATTTTGTAAAAGAAACCATCAAGCCGATCCAAATATATAATATATTGGTTTTCTCGATTTTCCTTGTTTTCTTGACTCTTCTCAGTACCTGTA
GTGAGCAGGCTTGTATGGACCCTCCACAGGGACACTAATGTAGTCAGCCTGGTCCTTGCTGAGCTTGGTGAGCCTAGCCCCAAGTTTGCCAAGGTGAAGT
GCAGCAACCTTCTCATCAAGGTGCTTTGGCAAGACATAGACCTTCTTCTCATACTTCCCGGTAGTCCTCTCCTTCCACAGCTCAAGCTGTGCAATCACCT
GGTTTGTGAATGAACAAGACATCACGAAACTTGGGTGCCCTGTGGCACAACCCAAGTTCATGAGCCGACCCTCAGCCAACACAATGATGCCTGAGTTTGT
ATCAGGGAAGACCCACCTGTCTGTTTGGGGCTTGATGGTGATACGCTTCACACCTGGATAGTTCTCAAGGCCGAGCATGTCAATCTCATTGTCAAAGTGA
CCAATGTTGCAAACAATAGCATTGTTCTTCATCTTCCTCATGTGGTCGACCATGATGATGTCCTTGTTACCGGTGGTGGTTACAAAGATGTCAGCCTCAG
ATACAACATCCTCAAGGGTTAGAACTTGGAGGCCTTCCATAAGGGCCTGAAGAGCGCAAATTGGATCAATCTCAGTCACAATCACACGGGCACCAGCTTG
CTTCATGGCAGCAGCACAGCCCTTGCC