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Detailed information on CNT30723061


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71V89|H33_GOSHI, E-value = 1e-56

BLAST vs NONCODE:
NONBRAT001321, E-value = 9e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30358587Triticum speltaLactuca sativa21.1922.7782.4125forward
CNT3099660Triticum speltaOryza rufipogon41.0253.4290.5242forward
CNT30583665Triticum speltaEchinochloa crusgalli51.1934.0593.71302forward

Expression of CNT30723061

SRR9114152: 72.15 RPKM

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKRASTAWDWKRRSVLKSCAISRTRRWKGSLRMSSSVLFWYLRISRSATVPGL*

>peptide 2 (39 aa)
ITRGFSEQESQEDSVNENHMRIQRTGGINLTVPQNCIHR*

Sequence

>CNT30723061
GAATCACAAGAGGATTCAGTGAACAGGAATCACAAGAGGATTCAGTGAACGAAAATCACATGAGGATTCAGAGAACAGGAGGCATCAACCTCACAGTACC
TCAGAATTGCATACATCGATAATGGTCGATCAACAGTATATTAACCAACAATTTCACAGTAAGCATCTGTTTGCATCACCGCAAACGACCTAACACGATC
TAATTAAAAGGGCAGGCGAATCAACTACTGCTGGCGAACGGTGGCATGAGGCGGCTGGGGTTGTGATTGGTCTCGCTCCCGCTTAGGCGCGCTCCCCGCG
GATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGGGCGAGCACGGCGTGG
GACTGGAAGCGGAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGGACCAGGCGCTGGAAGGGCAGCTTGCGGATGAGCAGCTCCGTGCTCTTCTGGTACT
TGCGGATCTCGCGGAGCGCCACGGTCCCGGGCCTGTAGCGGTGCGGCTTCTTCACGCCGCCGGTGGTCGGGGCCGACTTCCTGGCGGCCT