Detailed information on CNT30723028


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533443Triticum speltaEucalyptus grandis58.3683.2690.95199reverse complement
CNT30592641Triticum speltaMusa acuminata100.295.0885.38342reverse complement
CNT30228064Triticum speltaAnanas comosus87.1100.6895.62297forward
CNT30431658Triticum speltaPapaver somniferum51.9111.1593.22177reverse complement

Expression of CNT30723028

SRR9114152: 1.33 RPKM

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MNRGEPSDDPSKIRGEILSSGDPLTLPLTYICTECSYGKVNSWVWNQGGCSEKKSFLSRPL*

>peptide 2 (82 aa)
MYRMLIRESELLGMEPGGLLREKILSFSSTLGGADTPARITGDGYKNGGEVKSTRRHSGMNVDPSGGDNHSGPGRGGVTSLS*

Sequence

>CNT30723028
ATGAACCGCGGCGAACCCTCAGACGACCCTTCTAAGATAAGGGGGGAGATCCTCAGTAGTGGTGACCCTTTGACTCTTCCACTGACTTATATATGTACCG
AATGCTCATACGGGAAAGTGAACTCCTGGGTATGGAACCAGGGGGGTTGCTCCGAGAAAAAATCCTTTCTTTCTCGTCCACTCTAGGGGGTGCGGACACA
CCTGCGCGGATTACAGGTGACGGTTACAAGAATGGCGGGGAAGTGAAGAGTACCCGACGACATTCAGGGATGAATGTAGACCCATCGGGCGGGGATAATC
ATTCCGGTCCTGGGAGAGGTGGCGTCACCAGTCTGAGCTGA