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Detailed information on CNT30722943


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 4e-57

BLAST vs NONCODE:
NONBNAT004661, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Triticum speltaOryza sativa47.3937.2799.48954forward
CNT30677083Triticum speltaSetaria viridis20.9158.894.77421forward
CNT30536068Triticum speltaEucalyptus grandis64.2837.5793.431294reverse complement
CNT30513456Triticum speltaJuglans regia77.8949.495.221568forward
CNT30500477Triticum speltaCoffea canephora65.2872.1694.061314forward
CNT30269781Triticum speltaChenopodium quinoa77.8953.0694.521568forward
CNT30730500Triticum speltaCorchorus capsularis51.2786.9494.861032forward
CNT30630109Triticum speltaVigna unguiculata69.444.3294.71397forward
CNT30196411Triticum speltaPisum sativum47.4475.4992.36955forward
CNT30638683Triticum speltaCapsicum annuum25.3899.0390.61511reverse complement
CNT3090649Triticum speltaSolanum tuberosum77.8957.3595.61568forward
CNT30225309Triticum speltaHordeum vulgare43.5272.795.09876forward
CNT30400299Triticum speltaTriticum turgidum47.3944.7399.58954forward
CNT30511396Triticum speltaSolanum lycopersicum21.5147.3291.69433forward
CNT30552690Triticum speltaOryza glaberrima18.2824.0497.55368forward
CNT30441975Triticum speltaAegilops tauschii30.677.2999.35616forward
CNT30310298Triticum speltaCamelina sativa48.9364.5995.13985reverse complement
CNT30266045Triticum speltaBrassica rapa13.5161.498.53272forward
CNT30655263Triticum speltaRosa chinensis54.160.33911089forward
CNT30208936Triticum speltaHelianthus annuus73.1773.0794.091473forward
CNT30713553Triticum speltaMalus domestica golden30.1590.0693.57607forward
CNT30627950Triticum speltaDaucus carota21.41100.2392.11431forward
CNT30688464Triticum speltaTriticum urartu56.5361.8599.31138forward
CNT30364730Triticum speltaSorghum bicolor19.8270.3798.75399reverse complement
CNT30154922Triticum speltaPrunus persica54.1564.5492.391090reverse complement
CNT30411976Triticum speltaPapaver somniferum57.9753.5194.341167forward
CNT30319706Triticum speltaAsparagus officinalis77.7954.4996.11566forward
CNT30102929Triticum speltaOryza rufipogon47.5962.9497.6958reverse complement

Expression of CNT30722943

SRR9114152: 53.05 RPKM

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGHVESRVNQQGPPCKAKYSWVTDSEVVP*

>peptide 2 (49 aa)
MGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSAE*

>peptide 3 (68 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNRESGGRRSGSENVGLSNENIGENPMPRKPKVSSARFVHGG*

>peptide 4 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSTKRKRECRLE*

>peptide 5 (41 aa)
MSVKMRTTCTWTERPYEALLFPGIGFGPFLRSLGGRRRRPPS

Sequence

>CNT30722943
TTGATCCGGAGATTCCCAAATAGGTCAACCTTTTAAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCA
GAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTTG
TGCTGCTAGGCGAAGCGGTTGAGTGCCGCACCCTAGATGGCTAAAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCA
CGTGGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGGAAAGGTGAAAAGAAC
CCCCAGTGGGTAGTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGCTTGGTTAAGGGAACGGAACCCACCGGAGCCGTAGCGAAAGCGAGT
CTTAATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGAC
TGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTAGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGT
TGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCCAAAAATAAC
AGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGT
GATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGGAATAGCTCACTGATCGAGCGCCCTTGCGC
TGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGG
GGGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAATGCCCCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTC
CACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGG
AGGAGGCTAGGTTAGCCGAAAGATGGTTATAGGTTTAAGGACACAAGGTGACCCTGCTTTTTCAGGGTAAGAAGGGGTAGAGAAAATGCCTCGAGCCGAG
GCTCATACCAGGCGCTACGGCGCTGAAGTATGTAACTGATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACC
GACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCC
TCACAAAAGGGGGCCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGACGCCTGCC
CAGTGCCGGAAGGTCAAGGAAGTTGGTGAACTGATGACAGGGAAGCCGGCGACCGAAGCCCCGGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAG
CGAAATTCCTTGTCGGGTAAGTTCCGAGCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGA
TGCGGACTACCTGCACCTGGACAGAAAGACCCTATGAAGCTTTACTGTTCCCTGGGATTGGCTTTGGGCCTTTCCTGCGCAGCTTAGGTGGAAGGCGAAG
AAGGCCCCCTTCC