Detailed information on CNT30722781


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 5e-101

BLAST vs NONCODE:
NONMEST001181, E-value = 7e-87

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30306107Triticum speltaTriticum aestivum69.3385.18100615forward
CNT30576843Triticum speltaOryza barthii52.5467.9392.27466forward
CNT30583294Triticum speltaEchinochloa crusgalli52.4224.4491.61465forward

Expression of CNT30722781

SRR9114152: 1.03 RPKM

Peptides detected in this lncRNA

>peptide 1 (90 aa)
QDKPNLGSLIHSSPKLLHTSRSLKIQTVTLHQCTVQKQRRDLRTQRPKQSSIARSFTGHHGDGAPSEGWTPSGCCSPPRCGHPQAAYRQR*

>peptide 2 (34 aa)
MYSTETKTRLANPETEAELHRQELYWPPRRRSTK*

>peptide 3 (61 aa)
MRRCWSGGMPSLSWIFAFTLSMVSDDSTSRVMVLPVRVFTNICMPPRSLSTKWRVDSFWML*

>peptide 4 (57 aa)
MRRCWSGGMPSLSCIFALTLSMVSEDSTSRVMVLPVRVFTKICICKYKADRTRVSCR*

Sequence

>CNT30722781
GCAAGACAAACCGAATTTAGGCTCACTTATTCATAGTTCACCAAAGCTGCTGCACACCAGCAGAAGTTTGAAGATACAAACGGTAACACTGCATCAATGT
ACAGTACAGAAACAAAGACGAGACTTGCGAACCCAGAGACCGAAGCAGAGCTCCATCGCCAGGAGCTTTACTGGCCACCACGGAGACGGAGCACCAAGTG
AAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAAGGTGCGGCCATCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCC
TCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGACGACTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCA
TGCCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGAT
GAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGTATCTTTGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTG
CCAGTAAGGGTCTTCACGAAGATCTGCATCTGTAAATACAAAGCAGACAGAACCAGAGTAAGTTGCCGGTAAGGGTCTTCACGAAGATCTGCAGTATGTC
AAACAATAGATGAACCAGATGGCACCATGCTAAAAAAATGAAATTGCAACAGAGATGAAATCAGCAAACTGCCCAGGAGCTGCCCCAGTACAAGAAGCCA
ATGAATTGACATAGCATGCAATGCTAAATTTTAGCTTAACTATATATTAGCATATCTACCAGCGCAATCTTTACCTTCAGTGGGAGC