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Detailed information on CNT30722731


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Triticum speltaSetaria viridis36.228.8684.86185forward
CNT30316236Triticum speltaCorylus avellana1820.0482.6192forward
CNT3071371Triticum speltaQuercus suber20.3536.2485.58104forward
CNT30711584Triticum speltaGlycine max43.0531.2580.45220forward
CNT30191206Triticum speltaSecale cereale42.0717.5794.42215forward
CNT30300473Triticum speltaTriticum aestivum41.4921.994.34212forward
CNT30543621Triticum speltaBrassica napus20.3540.6288.46104forward
CNT30552635Triticum speltaOryza glaberrima44.0321.6884.89225forward
CNT30143941Triticum speltaMedicago truncatula30.3334.680.65155forward
CNT30442766Triticum speltaAegilops tauschii49.3249.3296.83252forward
CNT30309889Triticum speltaCamelina sativa20.3510.5982.69104forward
CNT30263667Triticum speltaBrassica rapa20.3514.7188.46104forward
CNT30445994Triticum speltaSaccharum spontaneum23.298.3688.24119forward
CNT30135610Triticum speltaLolium perenne42.4725.6582.03217forward
CNT3014085Triticum speltaZea mays42.4735.5783.41217forward
CNT30716253Triticum speltaMalus domestica golden23.298.9784.03119forward
CNT30683923Triticum speltaTriticum urartu22.1112.3595.58113forward
CNT30345702Triticum speltaEragrostis tef43.4427.4884.23222forward
CNT30361520Triticum speltaSorghum bicolor44.2333.0483.63226forward
CNT30596064Triticum speltaOryza meridionalis44.0343.9585.33225forward
CNT30369654Triticum speltaOryza glumipatula44.0325.5784.89225forward
CNT30107537Triticum speltaOryza longistaminata44.0324.4885.33225forward
CNT30100253Triticum speltaOryza rufipogon44.0320.4284.89225forward
CNT30575129Triticum speltaOryza barthii44.0327.6484.44225forward
CNT30116094Triticum speltaOryza nivara44.0325.5784.89225forward
CNT30557952Triticum speltaPanicum hallii23.2914.689.08119forward
CNT3050899Triticum speltaCucumis sativus21.5343.6583.64110forward

Expression of CNT30722731

SRR9114152: 67.36 RPKM

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MMSQWSNTHWGKAWPDVAALRVLENPKDSMTGRHTS*

Sequence

>CNT30722731
CCAGTGGACAACAGATACATAATCTAAGTAAAACATCCGTTACATCACCAGACATCTCAAAACATAGTTCCCAGTATCACGACAAATAGGTCATTAACAG
CAAGACTCATCGATACAAAATAGTGCGGCTCTCTTTAACAACACAAGACCAGGTAAGGGATAACAGCACCAAAAATTTAGAGCTTGTCTTCGAAATCGGA
TAGAGGGGTCATCTGCTCCTTGAGCCCCTTCCTCTTGCGGATCTCCGTGACGAGCGTCGCAGACTGGGTGCCGGGGTCCAAAGGATCGGAAGCCATGATG
TCCCAGTGGTCAAACACACACTGGGGGAAGGCCTGGCCGGACGTCGCAGCCCTCAGGGTGCTTGAGAACCCAAAGGACTCGATGACGGGGAGGCATACAT
CTTAGCAAAGTTTGTAAGGGTGAAAGCCCACCCATGCAGACCAGCAGAGAATGCAACAGTCCCCTTTTCAGGGTACACTTGGACATCACCAAGGAGCACA
TCTTCATATGT