Detailed information on CNT30722585


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43217|H2B3_WHEAT, E-value = 2e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Triticum speltaOryza sativa28.3832.8696.63208forward
CNT30671720Triticum speltaSetaria viridis27.6945.2197.54203forward
CNT30523142Triticum speltaSetaria italica36.2951.1596.24266forward
CNT30518328Triticum speltaJuglans regia37.3852.984.31274forward
CNT30181099Triticum speltaSecale cereale48.2943.8196.61354forward
CNT30565715Triticum speltaActinidia chinensis37.6535.1685.51276forward
CNT30586986Triticum speltaMusa acuminata34.9272.3289.84256forward
CNT30552027Triticum speltaOryza glaberrima39.0253.0695.8286forward
CNT30171046Triticum speltaTrifolium pratense37.6577.7579.71276forward
CNT30435171Triticum speltaAegilops tauschii67.9459.7896.99498forward
CNT30244799Triticum speltaAvena sativa42.9743.8796.19315forward
CNT30668428Triticum speltaTriticum dicoccoides48.2963.3396.05354forward
CNT30447591Triticum speltaSaccharum spontaneum42.757.4396.49313forward
CNT30130711Triticum speltaLolium perenne37.3840.2997.08274forward
CNT3066775Triticum speltaLeersia perrieri17.3333.0798.43127forward
CNT30205622Triticum speltaHelianthus annuus10.127.4190.5474forward
CNT30129800Triticum speltaCorymbia citriodora39.2935.7890.62288forward
CNT30684130Triticum speltaTriticum urartu41.7542.2196.73306forward
CNT30346527Triticum speltaEragrostis tef24.1583.8996.61177forward
CNT30363575Triticum speltaSorghum bicolor42.733.9596.81313forward
CNT30596761Triticum speltaOryza meridionalis40.6537.7289.6298forward
CNT30570929Triticum speltaVitis vinifera35.7439.0580.92262forward
CNT3052765Triticum speltaAmborella trichopoda19.5128.1586.71143forward
CNT30327286Triticum speltaAsparagus officinalis37.3830.3191.61274forward
CNT30103076Triticum speltaOryza rufipogon36.8344.7889.63270forward
CNT30577496Triticum speltaOryza barthii27.5637.8395.05202forward

Expression of CNT30722585

SRR9114152: 32.23 RPKM

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKEFMMDMALEEMPMSGCTCLSTLKM*

Sequence

>CNT30722585
GAGCAATAATTCAGACAGCAACCTGACTAATTCTTCAGACCCACAAGCAGCACAATTCTTACAGAGATTGTAACATCGCACTGCTAACTACACACAGAAC
ACCGCCATCAACTCATGATACAAGGATGAAGCCTAAGAAGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGG
GGAGGACGAGGCGGACGGAGGTCTGGATCTCCCTCGACGTGATGGTGGGCTTCTTGTTGTAGCGGGCCAGCTTGGCGGACTCGCCGGCGAGCTTCTCGAA
GATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGT
GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGACTC
GCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCCGGGTGCACCTGCTTGAGCACCTTG
AAGATGTAGATCTTGTACGTCTCCACGCTCTTCTTGGACTTCTTCTTGCCCTTCTTCTCGCCGCCCTCCTTGGACGCCGGCGGCCGCTTCTCTGCCTTGG
GCTTCTTCCCCGCTGGAGCCTTCTCCGTGGCCA