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Detailed information on CNT30722533


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB0|TBB3_WHEAT, E-value = 7e-78

BLAST vs NONCODE:
NONBNAT004015, E-value = 9e-70

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534291Triticum speltaEucalyptus grandis46.6741.7680.83266forward
CNT30516889Triticum speltaJuglans regia47.5444.7981.55271forward
CNT30562825Triticum speltaActinidia chinensis57.1959.0683.13326forward
CNT30586804Triticum speltaMusa acuminata35.7926.4284.31204forward
CNT30261872Triticum speltaBrassica rapa61.2339.4480.23349forward
CNT30570854Triticum speltaVitis vinifera25.6172.6484.93146forward
CNT3057379Triticum speltaAmborella trichopoda25.9653.0583.11148forward
CNT30332119Triticum speltaDioscorea rotundata46.4941.7384.15265forward

Expression of CNT30722533

SRR9114152: 0.45 RPKM

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MEARERDQVDCEFPEVGVQLTGEAEAASDTAHCCRYKMVQITN

>peptide 2 (58 aa)
GYQAHSYANITVRIKPPSTYKKKTVQKISIRRSSKSIYKCYQPPKDLSAPQAPPNRQQ*

Sequence

>CNT30722533
GGGTATCAAGCCCACAGTTACGCTAATATCACAGTTCGCATAAAACCACCATCAACATACAAAAAAAAAACAGTTCAAAAAATATCGATTCGCCGAAGCA
GCAAAAGCATCTATAAGTGTTACCAACCACCTAAAGATCTATCCGCACCACAAGCACCACCAAATCGACAGCAATAGTAAACACAAGGCATATCTAACAG
ACAGCAGGATGACCATATGAGTTCTTGTTCTGGACGTTCAGCATCTGCTCGTCAACCTCCTTGGTGCTCATCTTCCCACGGAACATGGCAGAGGCTGTGA
GGTAGCGGCCGTGCCGCGGGTCAGCAGCACACATCATGTTCTTTGAGTCCCACATCTGCTGGGTCAACTCAGGAACAGTGAGGGCACGGTACTGCTGAGA
ACCCCTTGAGGTCAGTGGTGCAAAGCCAACCATGAAGAAATGGAGGCGAGGGAACGGGATCAAGTTGACTGCGAGTTTCCGGAGGTCGGAGTTCAGCTGA
CCGGGGAAGCGGAGGCAGCAAGTGACACCGCTCATTGTTGCAGATATAAGATGGTTCAGATCACCAACTG