CANTATAdb - search

Detailed information on CNT30722497

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 4e-99

BLAST vs NONCODE:
NONGMAT000502, E-value = 3e-45

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30308860	Triticum spelta	Triticum aestivum	100	91.28	100	680	forward

Expression of CNT30722497

SRR9114152: 8.49 RPKM

Peptides detected in this lncRNA

>peptide 1 (35 aa)
DKQHRYGTDDRVSHDIKGSLIHHVFIIQTQSHITS*

>peptide 2 (37 aa)
MRRCWSGGIPSLSWILALTLSIVSDDSTSRVMVLPVRV

>peptide 3 (58 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVLTKICMPPRSLSTRWRVDSF*

>peptide 4 (68 aa)
ETNNTGMAQTIEFHMILRVHLFITFSSSKLKATSHHKFVDTNKHSSDRNTTRAHAENYIGVHRQHQTC*

Sequence

>CNT30722497
GAGACAAACAACACAGGTATGGCACAGACGATAGAGTTTCACATGATATTAAGGGTTCACTTATTCATCACGTTTTCATCATCCAAACTCAAAGCCACAT
CACATCATAAGTTTGTAGACACAAACAAACATAGCAGCGATAGAAACACGACCAGAGCACACGCTGAAAACTACATTGGAGTACACCGACAACACCAGAC
CTGTTAACCCTGAGACAGAAGCGGCTATCACGCACTTACTGGCCACCACGCAGGCGGAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTG
CCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTGTC
GATGGTGTCCGAGGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGCCTCCACGAAGCCTGAGCACCAGGTGGAGG
GTGGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATTCCCTCCT
TGTCCTGGATCTTGGCCTTGACATTATCGATCGTGTCAGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC