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Detailed information on CNT30722476


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB0|TBB3_WHEAT, E-value = 1e-93

BLAST vs NONCODE:
NONBNAT004015, E-value = 1e-87

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Triticum speltaSetaria viridis60.6948.8685.96406forward
CNT30522155Triticum speltaSetaria italica47.8336.4184.38320forward
CNT30641079Triticum speltaNymphaea colorata35.2831.7686.02236forward
CNT30377262Triticum speltaArabidopsis thaliana42.348.4687.99283forward
CNT30617295Triticum speltaSesamum indicum31.2450.9881.34209forward
CNT30728062Triticum speltaCorchorus capsularis44.2533.9883.11296forward
CNT30196370Triticum speltaPisum sativum29.920.9986200forward
CNT30708222Triticum speltaGlycine max24.0739.9585.09161forward
CNT30511260Triticum speltaSolanum lycopersicum18.6831.0284125forward
CNT30553024Triticum speltaOryza glaberrima53.2124.9382.3356forward
CNT30253208Triticum speltaAvena sativa58.5932.6194.39392forward
CNT30614070Triticum speltaArabis alpina25.4112.388.24170forward
CNT3015387Triticum speltaZea mays24.8110.2688.55166forward
CNT30608822Triticum speltaGossypium raimondii41.5541.4984.17278forward
CNT30203517Triticum speltaHelianthus annuus56.3533.5480.9377forward
CNT30627268Triticum speltaDaucus carota35.7219.3184.94239forward
CNT30681848Triticum speltaTriticum urartu60.6945.8884.24406forward
CNT30341625Triticum speltaEragrostis tef61.1441.9588.51409forward
CNT30364844Triticum speltaSorghum bicolor45.2969.587.79303forward
CNT30369350Triticum speltaOryza glumipatula51.4249.585.76344forward
CNT30433323Triticum speltaPapaver somniferum47.2328.9682.28316forward
CNT30706519Triticum speltaPrunus avium56.3545.4884.08377forward
CNT3033661Triticum speltaTheobroma cacao28.792.3185.42192forward
CNT3057373Triticum speltaAmborella trichopoda34.6842.5781.03232forward
CNT3024558Triticum speltaPopulus trichocarpa57.2520.9981.98383forward
CNT30328090Triticum speltaAsparagus officinalis46.3491.7285.48310forward
CNT3099978Triticum speltaOryza rufipogon45.5937.6587.21305forward
CNT30575061Triticum speltaOryza barthii55.941.1485.29374forward
CNT30333708Triticum speltaCynara cardunculus50.9742.182.11341forward

Expression of CNT30722476

SRR9114152: 3.81 RPKM

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKKWRRGNGIKLTASFRRSEFSWPGKRRQQVTPLMV

>peptide 2 (77 aa)
MSHTLDFTLLGIHSTKYDEFLFWTFSICSSTSFVLIFPRNMAEAVRYRPCRGSAAHIMFFESHICWVNSGTVRARYC*

>peptide 3 (33 aa)
MEARERDQVDCEFPEVRVQLAGEAEATSDATHGC

Sequence

>CNT30722476
TGCACAGTAAAAAGACACAAAATATAATTCCAGAATTTACGAGTATCAAGTCCACAGTTACGCTAATATCACAATTCGCATAAAACCACCATCAACATAC
AAAAGACAGTTCAAAAAATATCGATTCGCCGAAGCAGCAAAAGCATCTATAAGTGTTATCAACCACCTAAAGATCTATCCGCACCACAAGCACCACCAAA
TCGACAGCAATAGTAAACACAAGGCATATCTAGCAGACAGCAGGACGACCGGATGAGGTCAGGTGGACGACATTGACAGGCCTGTGGGAGGGATGTCACA
CACGCTTGACTTCACATTGTTGGGTATCCACTCAACGAAGTACGACGAGTTCTTGTTCTGGACGTTCAGCATCTGCTCATCAACCTCCTTTGTGCTCATC
TTCCCACGGAACATGGCAGAGGCTGTGAGGTACCGGCCGTGCCGCGGGTCAGCAGCACACATCATGTTCTTTGAGTCCCACATCTGCTGGGTCAACTCAG
GAACAGTGAGGGCACGGTACTGCTGAGAACCCCTTGAGGTCAGTGGTGCAAAGCCAACCATGAAGAAATGGAGGCGAGGGAACGGGATCAAGTTGACTGC
GAGTTTCCGGAGGTCAGAGTTCAGCTGGCCGGGGAAGCGGAGGCAACAAGTGACGCCACTCATGGTTGC