Detailed information on CNT30722427


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402401Triticum speltaBeta vulgaris49.4824.0785.31286forward
CNT30629386Triticum speltaVigna unguiculata28.8964.7386.23167forward
CNT30542792Triticum speltaBrassica napus24.3932.4990.07141forward
CNT30150328Triticum speltaBrachypodium distachyon35.4766.3485.37205forward

Expression of CNT30722427

SRR9114152: 0.25 RPKM

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MSHTLDFTLLGIHSTKYDEFLFWTFSICSSTSFVLIFPRNMAEAVRYRPCRGSVVQSQP*

>peptide 2 (33 aa)
MEARERDQVDCEFPEVRVQLAGEAEATSDATHGC

>peptide 3 (35 aa)
MKKWRRGNGIKLTASFRRSEFSWPGKRRQQVTPLMV

Sequence

>CNT30722427
TGCACAGTAAAAAGACACAAAATATAATTCCAGAATTTACGAGTATCAAGTCCACAGTTACGCTAATATCACAATTCGCATAAAACCACCATCAACATAC
AAAAGACAGTTCAAAAAATATCGATTCGCCGAAGCAGCAAAAGCATCTATAAGTGTTATCAACCACCTAAAGATCTATCCGCACCACAAGCACCACCAAA
TCGACAGCAATAGTAAACACAAGGCATATCTAGCAGACAGCAGGACGACCGGATGAGGTCAGGTGGACGACATTGACAGGCCTGTGGGAGGGATGTCACA
CACGCTTGACTTCACATTGTTGGGTATCCACTCAACGAAGTACGACGAGTTCTTGTTCTGGACGTTCAGCATCTGCTCATCAACCTCCTTTGTGCTCATC
TTCCCACGGAACATGGCAGAGGCTGTGAGGTACCGGCCGTGCCGCGGGTCAGTGGTGCAAAGCCAACCATGAAGAAATGGAGGCGAGGGAACGGGATCAA
GTTGACTGCGAGTTTCCGGAGGTCAGAGTTCAGCTGGCCGGGGAAGCGGAGGCAACAAGTGACGCCACTCATGGTTGC