Detailed information on CNT30722378


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-93

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189392Triticum speltaSecale cereale71.3356.7594.46433forward
CNT30302747Triticum speltaTriticum aestivum10032.3100607forward
CNT30397788Triticum speltaTriticum turgidum10090.697.86607forward
CNT30107357Triticum speltaOryza longistaminata70.3557.1691.57427forward
CNT30150050Triticum speltaBrachypodium distachyon70.6832.0693.24429forward
CNT30116053Triticum speltaOryza nivara70.3560.7492.04427forward

Expression of CNT30722378

SRR9114152: 20.5 RPKM

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICMPPRRRSTRWRVDSFWML*

>peptide 2 (31 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSRVM

>peptide 3 (57 aa)
KLTYSYLTVQMYLQLFAPNHRTRWSIKAADTVRLHTNETSLEQRRHRVQQQQQQVKR*

Sequence

>CNT30722378
AAGTTGACTTATTCATACTTAACGGTACAGATGTACCTGCAACTGTTTGCACCAAACCACAGGACTCGATGGTCCATTAAAGCAGCAGACACAGTACGAC
TTCACACAAACGAGACATCACTTGAACAAAGGCGACACAGGGTACAGCAGCAGCAGCAGCAGGTCAAACGATAGGGCAATTACTGACCACCACGGAGGCG
GAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCC
GGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTCA
CGAAGATCTGCATGCCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCCAGCTGCTT
GCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGACGACTCAACCTCAAGG
GTGATGG