Detailed information on CNT30722325


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-101

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-105

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189291Triticum speltaSecale cereale61.8563.2596.21475forward
CNT30396078Triticum speltaTriticum turgidum62.1125.1896.02477forward
CNT30253560Triticum speltaAvena sativa60.4264.7194.4464forward
CNT30667751Triticum speltaTriticum dicoccoides60.9410099.15468forward
CNT30127456Triticum speltaCorymbia citriodora59.5157.5691.03457forward
CNT30686718Triticum speltaTriticum urartu62.521.9995.42480forward
CNT30580899Triticum speltaEchinochloa crusgalli60.4296.0790.95464forward

Expression of CNT30722325

SRR9114152: 35.98 RPKM

Peptides detected in this lncRNA

>peptide 1 (92 aa)
QGIHKGHEKTSNSSTIYKTNSRLAQADLSEVHLFITQRYCCASNSFNQQITRGLDSSLNQHSRTDTNEKTVQMNDRTPGQLRTTTPRRRSTM*

>peptide 2 (67 aa)
MEGGLLLDVVVGEGTAILQLLASKDQALLVRGNSLLVLDLGLDVVNGVGALNLKGDGLAGEGLHEDLH

>peptide 3 (53 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICMPPRRRSTRWRVDSFWML*

Sequence

>CNT30722325
TCAAGGAATTCATAAAGGGCACGAGAAAACAAGCAATTCAAGCACAATATACAAAACCAACAGCAGATTAGCGCAAGCAGATTTATCTGAAGTTCACTTA
TTCATTACGCAACGATACTGCTGTGCCAGCAACAGTTTCAACCAACAGATAACACGGGGACTCGATAGTTCATTAAACCAACACAGCAGGACTGACACGA
ACGAGAAAACAGTTCAAATGAACGACAGGACGCCAGGGCAATTACGGACCACCACACCACGGAGACGGAGCACCATGTGAAGGGTGGATCAAACGCCAGG
GCAATTACTGACCACCACGGAGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCTAGGGTGCGACCATCCTCCAGCTGCTTGCC
AGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCAACCTCCAGAGTG
ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGCCACCACGCAGGCGCAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGA
GGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAAT
GGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATCT