« Back to Quercus suber search


Detailed information on CNT3072231


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30163372Quercus suberPistacia vera20.4620.1484.48116forward
CNT30224080Quercus suberHordeum vulgare17.8129.2883.17101forward
CNT3057074Quercus suberAmborella trichopoda23.8123.3681.48135forward
CNT3065708Quercus suberSelaginella moellendorffii16.426.890.3293forward

Expression of CNT3072231

Peptides detected in this lncRNA

>peptide 1 (76 aa)
TRQDQTHRSLNLPRRDRGLLVVPSQSRRLLGELLEDIVDEAVHDPHSLARNPNIGVNLFENLEELRTKLEKKETVE*

Sequence

>CNT3072231
CACCAGGCAAGACCAAACGCACCGCAGTCTGAATCTCCCGAGACGTGATCGTGGGCTTCTTGTTGTACCGAGCCAATCGCGACGACTCCTGGGCGAGCTT
CTCGAAGATATCGTTGATGAAGCTGTTCATGATCCCCATAGCCTTGCTCGAAATCCCAATATCGGGGTGAACCTGTTTGAGAACCTTGAAGAGTTAAGAA
CCAAACTTGAGAAAAAAGAGACAGTGGAGTAAGTGGAATTGGAGAAAGAAACTATTTTGGCTTTTTTATTCTTTGGATCCCATGTTTTGAAAGCTAGAGA
GAGGATGTATGAAGGAGAATCTTGTAGCAGATAACACAATACAGAGAGAAATTTATGTTTATTTTTTATATTTATTTTTAAAAATGATTCTATAATTCCT
TGCTCTATCTTTATATTAACATTATGTCAAAATGTTATGATATTATTATGGTGCAATGTAAATGATGACTAAAAGATCTTGTGAGCATTGGTCTCTTTCC
CAGTAACTTGTAATGAAGCATGTATATAGGTACTGTGGCTTTTTTACTTGAGCAGTCAGGATTGCGG