Detailed information on CNT30722254


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 9e-153

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691368Triticum speltaOryza sativa98.7829.6591.81647forward
CNT30242302Triticum speltaAvena sativa99.6963.3492.19653forward
CNT30143319Triticum speltaLolium perenne97.472.4293.42638forward
CNT30364163Triticum speltaSorghum bicolor98.3270.1589.91644forward
CNT30100520Triticum speltaOryza rufipogon99.5465.7390.34652forward
CNT30583684Triticum speltaEchinochloa crusgalli98.7830.8289.03647forward

Expression of CNT30722254

SRR9114152: 18.86 RPKM

Peptides detected in this lncRNA

>peptide 1 (69 aa)
SGFLLDVVVGKGAAILQLLASEDETLLVRGNALLVLDLGLDVVDGVRALNLQSDGLASKGLHKDLHATS*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWIFALTLSMVSEDSTSRVMVLPVRVLTKICMPPRRRRTRWRVDSFWML*

>peptide 3 (42 aa)
MRRCWSGGMPSLSWIFALTLSMVSDDSTSRVMVLPVNVFTKIC

>peptide 4 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICMPPRKRRTR*

Sequence

>CNT30722254
GAGTGGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTC
CTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATG
CCACCTCGTAAACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGA
GGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCC
AGTGAGGGTCTTGACAAAGATCTGCATGCCTCCCCGAAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCG
TCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAGACG
ACTCCACCTCAAGGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAGATCTGCAT