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Detailed information on CNT30722188


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LGI2|H2B10_ORYSJ, E-value = 3e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3072234Triticum speltaQuercus suber25.7727.9480.68176forward
CNT30526697Triticum speltaPhaseolus vulgaris28.5574.1484.1195forward
CNT30632073Triticum speltaVigna unguiculata28.9926.3384.34198forward
CNT30301550Triticum speltaTriticum aestivum62.3759.2598.12426forward
CNT30396147Triticum speltaTriticum turgidum64.2880.2698.18439forward
CNT3086649Triticum speltaVigna radiata41.2937.883.33282forward
CNT30443203Triticum speltaAegilops tauschii4748.9396.88321forward
CNT30666604Triticum speltaTriticum dicoccoides77.1610099.81527forward
CNT30457287Triticum speltaSaccharum spontaneum55.6445.5692.63380forward
CNT3015998Triticum speltaZea mays30.3153.6391.79207forward
CNT30684878Triticum speltaTriticum urartu42.6132.2397.25291forward
CNT30369169Triticum speltaOryza glumipatula43.4851.8394.95297forward
CNT3024772Triticum speltaPopulus trichocarpa28.8433.2279.19197forward
CNT30574682Triticum speltaOryza barthii27.8227.7896.32190forward
CNT30496069Triticum speltaDigitaria exilis56.9548.7590.75389forward
CNT30174435Triticum speltaVigna angularis40.4141.1981.52276forward
CNT30557628Triticum speltaPanicum hallii41.7351.1789.82285forward
CNT3065708Triticum speltaSelaginella moellendorffii18.7436.8986.72128forward

Expression of CNT30722188

SRR9114152: 276.22 RPKM

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKEFMMDMALEEMPMSGCTCLSTLKM*

>peptide 2 (40 aa)
MKRGRRLGGGELGDGLGALGDGVLGELAGEDKADGGLDLP*

Sequence

>CNT30722188
GCAGGGCGTACAGAAGAACCTTCCAACCAAAACTGAATAATACAAGCACACGTTGAACAATAATTCAGACAGCAACAACACTAATTCTTCAAACCAACAA
GCAGCACAATTCTTACAGAGATTGTAACATCGCACTGCTAACTACACACAGAACGCCGCCATCAGCTCATGAAACGAGGAAGACGCCTAGGAGGAGGTGA
ACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACAAGGCGGACGGAGGTCTGGATCTCCCTTGACGTGATGGT
GGGCTTCTTGTTGTAGCGGGCCAGCTTGGCGGACTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAG
ATGCCGATGTCGGGGTGCACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTACGTCTCCACGCTCTTCTTGGCCTTCTTCTTCCCCTTCTTCTCGCCGC
CCTCCTTGGACGCCGTCTTCCCGGCCGCGGGTCTCTTCTCCGCCGCGGGCTTCTTCCCCGCCGGGGTCTTCTCCAGCGCCGGCTTCTTCTCCGCCTTAGG
CGCCATGGGTGCTTCGACGGTGTGGGGAGGAGGTGGAGCTTTGTGCGAAGGTGTGGGCTGGGGGGCTGCGGATGCTGAGGTGT