Detailed information on CNT30722083


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224351Triticum speltaHordeum vulgare28.3249.8488.75160forward
CNT30661887Triticum speltaTriticum dicoccoides34.1631.989.64193forward
CNT30142918Triticum speltaLolium perenne17.5229.8287.8899forward
CNT30684964Triticum speltaTriticum urartu58.2363.5189.36329forward

Expression of CNT30722083

SRR9114152: 154.54 RPKM

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MVDRSITGGPAGGCGRRWPRRGRPRSSGTPSPPWISPFLSSPNYGNPRLG*

>peptide 2 (66 aa)
EKGTKIIRTQRRIFRSYDDLHFLPFKPSSNIGYSNITSQSMTEGIAASPTTDRPRLKDNTCCFFLA*

Sequence

>CNT30722083
GAGAGAAAGGAACAAAAATAATCAGGACACAGAGGAGGATATTTCGCAGCTATGACGACTTGCATTTTCTTCCATTTAAACCGAGTTCAAACATAGGATA
TTCCAACATCACATCCCAATCCATGACAGAAGGGATTGCTGCATCACCGACGACCGACCGACCAAGACTGAAAGATAACACATGTTGTTTCTTCCTCGCG
TAACCAGCTCTAATTAACCCCGGACAGAGCGACACTCGAGCTCGCGATCAAAAACACCACAGGACTCAACGACACACACGACGACTCAGACTGACTGACA
CAGGAACTGAAGATAACTTGCTGACGAAGACGACGAGATGGTAGATAGATCGATAACTGGAGGGCCTGCTGGAGGTTGTGGTCGTCGGTGGCCCAGGCGA
GGCCGCCCACGAAGCAGCGGTACTCCGTCTCCGCCATGGATCTCTCCCTTTCTCTCCTCTCCGAACTACGGAAACCCTAGACTAGGCTAGCTACTCTCGG
ACCCGAACCGAACCAGAACCCGAACCGGAAGGGGAGGAGAAGCCAACCCCGAGAGCGATGAGGAG