Detailed information on CNT30721977


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30579574Triticum speltaEchinochloa crusgalli20.8918.9997.8794forward

Expression of CNT30721977

SRR9114152: 46.75 RPKM

Peptides detected in this lncRNA

>peptide 1 (34 aa)
EPPPPTIYGDRVRPHTPAATTAANRRARPTPPPR*

>peptide 2 (90 aa)
SPRRQQSTEIGFVHTLPPPPPPRTGERGRHRRRDEGQVEEEEDEEAQEEAPKDEAAIQVGVEEQENDEAQEEVPKDEATIKVGEQLRRFD*

>peptide 3 (58 aa)
APAANNLRRSGSSTHSRRHHRREPESEADTAAAMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30721977
GAGCCCCCGCCGCCAACAATCTACGGAGATCGGGTTCGTCCACACACTCCCGCCGCCACCACCGCCGCGAACCGGAGAGCGAGGCCGACACCGCCGCCGC
GATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTAGGCGTGGAAGAACAAGAGAATG
ACGAGGCTCAAGAGGAAGTGCCAAAAGATGAGGCAACGATCAAAGTAGGTGAGCAATTGCGAAGGTTTGATTAAGTCTTGGTCAATTCCTGATGCCGCGT
CCTCTTGAATCCTGATGGTGATTCTGGTTGTGGCAAATGTGGATCTTTTGTAATCACTCATTAAATATCCTGAACTTTAAATATATAATTTGCCACTACC
TTGCTCTCTCAACGAATTGATTAGTTGCGCTCGGCTTGCAAGTCTTTCCT