Detailed information on CNT30721961


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRA9|TBB4_WHEAT, E-value = 1e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Triticum speltaOryza sativa55.4128.6289.63164forward
CNT30670745Triticum speltaSetaria viridis64.5330.0890.58191forward
CNT30641074Triticum speltaNymphaea colorata57.0946.0589.94169forward
CNT30595966Triticum speltaOryza meridionalis52.725.4589.1156forward
CNT30370171Triticum speltaOryza glumipatula55.4119.3489.63164forward
CNT30119164Triticum speltaCitrus clementina21.9613.9592.3165forward

Expression of CNT30721961

SRR9114152: 1.5 RPKM

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MDVELPTKVPAIFRPLGGMSHTLDLTLLGIHSTK*

>peptide 2 (97 aa)
DGRGVADEGARHLQAPGRHVAHARLDVVGDPLHKVGRVLVLDVEHLLVHLLGAHLPSEAGRGGEVAGEWDEIDSKLAKIGVELSREPQAACDTAHGSR

>peptide 3 (28 aa)
MRLTASLRRSELSCPGNLRQHVTPLMVAE

Sequence

>CNT30721961
GGATGGACGTGGAGTTGCCGACGAAGGTGCCCGCCATCTTCAGGCCCCTGGGCGGCATGTCGCACACGCTCGACTTGACGTTGTTGGGGATCCACTCCAC
AAAGTAGGACGAGTTCTTGTTCTGGACGTTGAGCATCTGCTCGTCCACCTCCTTGGTGCTCATCTTCCCTCGGAAGCAGGCCGAGGCGGTGAGGTAGCGG
GGGAATGGGATGAGATTGACAGCAAGCTTGCGAAGATCGGAGTTGAGTTGTCCAGGGAACCTCAGGCAGCATGTGACACCGCTCATGGTAGCAGAG