Detailed information on CNT30721908


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY4|METE2_ORYSJ, E-value = 6e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672500Triticum speltaSetaria viridis48.948.1494.84155forward
CNT30404178Triticum speltaBeta vulgaris29.9724.7484.2195forward
CNT30563287Triticum speltaActinidia chinensis54.5737.2882.08173forward
CNT30555769Triticum speltaOryza glaberrima85.4963.7693.36271forward
CNT30361575Triticum speltaSorghum bicolor81.740.5390.35259forward
CNT30597233Triticum speltaOryza meridionalis85.4973.6492.99271forward
CNT30323045Triticum speltaAsparagus officinalis74.1349.0680.43235forward
CNT30104304Triticum speltaOryza rufipogon85.4976.5594.1271forward
CNT30578403Triticum speltaOryza barthii85.4976.3494.1271forward
CNT30118019Triticum speltaOryza nivara84.5476.1492.54268forward
CNT30333335Triticum speltaCynara cardunculus74.4566.1183.05236forward

Expression of CNT30721908

SRR9114152: 390.81 RPKM

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MYLIPASAICFQMLALRSVATFSKSSALLLPSQKDSRANLSSLLGPMRGYPTMWDAIF

>peptide 2 (29 aa)
MSNGLGRHRAWRWCQEPDHSRRRCCWGCT*

Sequence

>CNT30721908
CTTGTATGAGTCTGCAGGGACGTCAGCGAAGTAGGTGCTCAAATTGATCTCCCCACCGGTCCATGAGTAACGGTCTGGGACGGCACCGAGCATGGCGGTG
GTGTCAAGAACCTGATCATAGTAGGAGAAGGTGTTGCTGGGGATGTACTTGATCCCAGCATCAGCCATCTGCTTCCAGATGCTGGCCCTGAGGTCGGTGG
CAACCTTCTCCAAATCCTCGGCGCTGCTCTTGCCATCCCAGAAAGACTCCAGGGCAAACTTGAGCTCCCTCTTGGGGCCCATGCGCGGGTATCCGACAAT
GTGGGACGCCATCTTTC