Detailed information on CNT30721901


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695840Triticum speltaOryza sativa33.3324.7188.82170forward
CNT30675663Triticum speltaSetaria viridis34.1237.4286.21174forward
CNT30187559Triticum speltaSecale cereale80.7861.7792.23412forward
CNT30298225Triticum speltaTriticum aestivum55.4936.9986.57283forward
CNT30224390Triticum speltaHordeum vulgare77.4571.8290.13395forward
CNT30394033Triticum speltaTriticum turgidum56.2721.2189.9287forward
CNT30554643Triticum speltaOryza glaberrima29.4131.5888.67150forward
CNT30441217Triticum speltaAegilops tauschii50.234.4590.62256forward
CNT30250974Triticum speltaAvena sativa24.3128.8494.35124forward
CNT30665102Triticum speltaTriticum dicoccoides51.3763.2990.84262forward
CNT3012962Triticum speltaZea mays33.3326.1184.12170forward
CNT30352420Triticum speltaEragrostis tef34.3128.2786.86175forward
CNT30366950Triticum speltaSorghum bicolor33.5319.9888.3171forward
CNT30103353Triticum speltaOryza rufipogon33.7317.1388.95172forward
CNT30584451Triticum speltaEchinochloa crusgalli34.3132.6588175forward
CNT30594767Triticum speltaEragrostis curvula11.9623.6490.1661forward

Expression of CNT30721901

SRR9114152: 0.0 RPKM

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MSVSFSGASSSSSMLRPSLSMRWILVPKVLGSSRLKPEVSREVSVSVAMAARVPELLEAGRGAEEKRAGGG*

>peptide 2 (83 aa)
MDIQRRQPTALRLVDLLHLALTSVILQGWHVGVVLRRLVVLVNAQAKLEHAVDPGAEGVGVLQAEAGGEQGGLGLRRHGCARS*

>peptide 3 (43 aa)
NSREYKNIANTYCRTNNNELFHEYHKQLTALNVWPAKRQNRYS*

Sequence

>CNT30721901
GCAATAGCAGGGAATATAAAAATATAGCTAACACATATTGTAGAACCAACAATAACGAACTGTTCCACGAGTACCACAAACAGCTAACCGCGCTTAATGT
TTGGCCAGCCAAAAGACAAAACCGATACAGCTAAACGTGCCAAAACCATCGAACTTCGACACTAAAGATAAAAACAACGCAGGGCATGGACATCCAACGA
CGACAGCCGACGGCCTTGCGCTTAGTCGACCTCCTCCATCTTGCTCTCACCAGCGTCATCCTCCAGGGGTGGCATGTCGGTGTCGTTCTCAGGCGCCTCG
TCGTCCTCGTCAATGCTCAGGCCAAGCTTGAGCATGCGGTGGATCCTGGTGCCGAAGGTGTTGGGGTCCTCCAGGCTGAAGCCGGAGGTGAGCAGGGAGG
TCTCGGTCTCCGTCGCCATGGCTGCGCGCGTTCCTGAGCTGCTCGAGGCGGGGCGGGGAGCGGAGGAGAAGCGTGCAGGAGGCGGCTAGGGTTAGGAGGG
GTTTTGAGAG