Detailed information on CNT30721860


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 2e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186769Triticum speltaSecale cereale74.0455.8597.18425forward
CNT30300848Triticum speltaTriticum aestivum83.4576.2795.82479forward
CNT30224976Triticum speltaHordeum vulgare76.3154.2196.12438forward
CNT30555612Triticum speltaOryza glaberrima62.0234.0785.96356forward
CNT30252135Triticum speltaAvena sativa63.7642.0790.16366forward
CNT30664522Triticum speltaTriticum dicoccoides83.4582.5998.33479forward
CNT30136970Triticum speltaLolium perenne64.8158.2286.83372forward
CNT30684606Triticum speltaTriticum urartu81.7162.7898.72469forward
CNT30351769Triticum speltaEragrostis tef58.5439.6781.55336forward
CNT30150944Triticum speltaBrachypodium distachyon64.2955.2488.89369forward
CNT30104669Triticum speltaOryza rufipogon62.0242.9486.24356forward
CNT30118025Triticum speltaOryza nivara52.2625.9386300forward
CNT30556975Triticum speltaPanicum hallii59.5842.882.16342forward
CNT30551876Triticum speltaOryza brachyantha60.840.5885.67349forward

Expression of CNT30721860

SRR9114152: 748.68 RPKM

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MCMCIYIAIGTNKKDKWKRKTQSNVRVDKTAMALYMWPVVSELFRPCRTPRSPVA*

>peptide 2 (29 aa)
VRWQRCFSLITQIHSRQIVLIILCACAYT*

>peptide 3 (54 aa)
MKLTHCTWRMLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGSFHIVQYRPS*

Sequence

>CNT30721860
GTGCGGTGGCAAAGATGTTTCTCATTAATTACCCAAATACATAGTCGACAGATTGTACTTATAATATTATGTGCATGTGCATATACATAGCCATCGGAAC
AAACAAGAAAGATAAATGGAAAAGGAAAACCCAAAGCAATGTCAGAGTTGACAAAACCGCAATGGCACTTTATATGTGGCCCGTGGTGAGTGAGCTGTTT
AGGCCTTGCCGGACTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCATGTTGTCGAATCCGATGATGCGGACATACGC
GTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGATCACCTGCGTGGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTACCGGCCA
TCGTAGTACCCAGGGGATGCGTTGTGCTCACGGAAGATAAACCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGAGCGGATCAGGTAGTCGACCT
GCTTGAGGAGGGCCTCCGTGCTGAGCGGTGGCAGGTAGGACAGGGTCTCGAACTTCTTAATGCCCTCGATGGGC