Detailed information on CNT30721780


BLAST search results

BLAST vs Swiss-Prot:
sp|P25862|TBB1_AVESA, E-value = 4e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677823Triticum speltaSetaria viridis41.5935.7490.4394forward
CNT30168132Triticum speltaPistacia vera44.6924.5787.13101forward
CNT30313575Triticum speltaCamelina sativa44.6943.3584.16101forward
CNT30422340Triticum speltaPapaver somniferum52.2113.9384.75118forward

Expression of CNT30721780

SRR9114152: 0.0 RPKM

Peptides detected in this lncRNA

>peptide 1 (51 aa)
KWRRGNGMRLTASLRRSELSCPGNLRQHVTPLMVAEIRWFRSASFGQGTPP*

>peptide 2 (73 aa)
VETWEWNEINSKLAEIRVELSREPQAACDTAHGSRDKMVQVSIIRSGYSSLILEIRRVPIPDPVPPPKEWQTWN

Sequence

>CNT30721780
AAGTGGAGACGTGGGAATGGAATGAGATTAACAGCAAGCTTGCGGAGATCAGAGTTGAGTTGTCCAGGGAACCTCAGGCAGCATGTGACACCGCTCATGG
TAGCAGAGATAAGATGGTTCAGGTCAGCATCATTCGGTCAGGGTACTCCTCCCTAATCTTAGAAATAAGAAGGGTTCCCATCCCAGATCCAGTGCCTCCA
CCCAAAGAATGGCAAACTTGGAATCC