« Back to Triticum spelta search


Detailed information on CNT30721746


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672571Triticum speltaSetaria viridis20.7779.5288.92334forward
CNT30546122Triticum speltaIpomoea triloba5.5325.2889.8989forward
CNT30186990Triticum speltaSecale cereale17.3575.294.62279forward
CNT30393881Triticum speltaTriticum turgidum18.9175.43100304forward
CNT30587002Triticum speltaMusa acuminata10.3961.8589.22167forward
CNT3086243Triticum speltaVigna radiata10.7638.786.13173forward
CNT30511330Triticum speltaSolanum lycopersicum11.3244.6185.16182forward
CNT30555589Triticum speltaOryza glaberrima21.9520.2395.47353forward
CNT30146667Triticum speltaMedicago truncatula5.1629.4384.3483forward
CNT30440426Triticum speltaAegilops tauschii20.0968.8796.59323forward
CNT30652852Triticum speltaRosa chinensis13.554.5287.1217forward
CNT30624277Triticum speltaDaucus carota18.4162.1882.77296forward
CNT30338628Triticum speltaEragrostis tef11.552.1192.97185forward
CNT30367313Triticum speltaSorghum bicolor13.6238.5694.52219forward
CNT30596728Triticum speltaOryza meridionalis7.5224.9595.87121forward
CNT30371441Triticum speltaOryza glumipatula7.931.1393.7127forward
CNT30646608Triticum speltaCannabis sativa8.3328.7686.57134forward
CNT3054135Triticum speltaAmborella trichopoda21.0855.8582.01339forward
CNT3024196Triticum speltaPopulus trichocarpa13.8749.1285.65223forward
CNT30322486Triticum speltaAsparagus officinalis16.7357.3686.25269forward
CNT30150825Triticum speltaBrachypodium distachyon24.1365.5491.75388forward
CNT30104395Triticum speltaOryza rufipogon12.540.6994.53201forward
CNT30117442Triticum speltaOryza nivara7.931.293.7127forward
CNT30725998Triticum speltaLupinus angustifolius13.12100.4882.94211forward

Expression of CNT30721746

SRR9114152: 302.36 RPKM

Peptides detected in this lncRNA

>peptide 1 (35 aa)
NKNMRQGQTQATRQTNIQAQSSLCGPTNPDHDSEN*

>peptide 2 (54 aa)
MSNKITEDKAYHDKFKDNRRKHIMHNSRLTEEQAYGNSCRLYNEQETSQGSTTE*

>peptide 3 (41 aa)
MTSVTTPLRYPLRSPKSSDLKRAGPLRWWVWDLKTEPAPLR*

>peptide 4 (73 aa)
KQKYAPGANSSNSTNKYPSTIFFMWTDESRPRQRKLITNITTLPKYRAKTTSILQYMSLTGNLEAANIDKQQR*

>peptide 5 (73 aa)
MLVVTSSVGMLHRVHGHTTHLRPGVPLHAVLVVGVTSLEHWLLSPATTSNLTNHGTAAAWDNLLGTRGELDPA*

>peptide 6 (60 aa)
TKICARGKLKQLDKQISKHNLLYVDRRIQTTTAKTDNKYHHVTKVPSKNDIHIAIHVLDG*

Sequence

>CNT30721746
AAACAAAAATATGCGCCAGGGGCAAACTCAAGCAACTCGACAAACAAATATCCAAGCACAATCTTCTTTATGTGGACCGACGAATCCAGACCACGACAGC
GAAAACTGATAACAAATATCACCACGTTACCAAAGTACCGAGCAAAAACGACATCCATATTGCAATACATGTCCTTGACGGGTAATCTAGAGGCAGCAAA
CATAGATAAACAGCAACGATAGCTCTAAGTGGCCTTGTCGGCCTTGGCAGCAGAGGCGGCAGCCTGGCCTCTGAGACGACCAGTCCTCCTGGCAGCGATG
AGACCAACCTTCTGGCCAGGTGGTGCATCACGGCGGACAGTGGAAGCGTGACCAATATGCTGGTGGTTACCTCCTCCGTGGGGATGCTCCACAGGGTTCA
TGGCCACACCACGCACCTTAGGCCAGGAGTTCCTCTTCACGCGGTACTTGTGGTAGGCGTTACCAGCCTTGAGCATTGGCTTCTCAGTCCTGCCACCACC
AGCAACCTGACCAATCATGGCACGGCAGCTGCTTGGGACAATCTTCTTGGCACCAGAGGGGAGCTTGATCCTGCATAAACAGAACATGAGTAACTGTGTC
TAAATATTTGTACAGCAGAAGAATTCATCAAAAGCATCAGTCCATCAGGCAACATAACCAAAGATACACATATGATCTCGTACTGACAAGGAAATGATAA
CAAGAAATGGTCCACGTATATGTAAACGCTAGTGATCATAATTCTTAAAGCACGGTAAGCCAATCTGAAGACAGAAGCAGGATAATATAGTTAGAGATCA
CATGTCTAACAAGATAACAGAAGATAAAGCATATCATGACAAGTTCAAGGATAACAGAAGAAAGCATATCATGCACAATTCTAGGTTAACAGAAGAGCAA
GCATATGGTAACAGCTGCAGATTATACAATGAACAGGAGACATCTCAAGGCTCAACGACAGAATGAGTTCCTAAGAATTTGTCTTTGATAGATTAACAAG
CATATGAAGCACACACATTTAAGGTTTCCAATCTTTAATCAATTAAAGAGCATCTAAATCACCCATGAGAAGCAGTGAACGAACATATATTCAGATCAAA
CTATGAGCATTTAATCATTTCCTACAGCAAATCACATACATAAAATCTAGTGACAGTTACTACCAGGAGAACGTCAGATCTAACCATGGTCATGTACTTT
AGATAGAGGGGTGAGAGGAAAGGTAACAGTACCTTGAGGTGCCGTTGTCAGGGTTGTGGCTGATGACGATGGCGTAGTCACCGGAGGCCCTGGCGAAGAC
ACCACGGTCGCCGACGTGGTGCTCGACGTTGCAGATGACGCCTCCCTCAGGCACGGAGCGGAGCGGGAGGACGTCACCTTGGCCAGCGGCGCACCACGCC
CCGGGTCGTGGATGACATCGGTGACGACGCCCTTGAGGTACCCGTTGCGCTCGCCGAAGTCGAGCGACCTGAAGCGGGCGGGGCCCTTGCGGTGGTGGGT
GTGGGACTTGAAGACGGAGCCCGCACCCTTACGCTGAGCGCGGATCACGCGACCCATCTCGGCGGCGGCAGCGGCGGAGTGGCGGCGGCGGCGAGGGGAA
TGGGTGGG