Detailed information on CNT30721718


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 5e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30393514Triticum speltaTriticum turgidum94.960.37100428forward
CNT30664831Triticum speltaTriticum dicoccoides93.7967.3699.76423forward
CNT30104366Triticum speltaOryza rufipogon31.9320.0384.03144forward
CNT30604900Triticum speltaOryza punctata23.2816.1386.67105forward

Expression of CNT30721718

SRR9114152: 79.88 RPKM

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MCMCIYIATDCIHIRACFLETCWYMNMDIHIFLGTNKKDKWRRKTQSNVRVDKTAMALYMWPVVSELFRPCRTPRSPVA*

>peptide 2 (43 aa)
MKLTHCTWRMLSNPMMRTYASGYSFLTSSTSLITCVAITVGAMA

Sequence

>CNT30721718
TGCGTGCGGTGCCAAAGATGTTTCTCATTATTAATTACCCGAATACATAGTCGACAGATTGTATAAATATATTATGTGCATGTGCATATACATAGCCACC
GATTGCATTCACATACGAGCATGCTTTCTCGAGACATGTTGGTACATGAACATGGACATACACATATTCTTAGGAACAAACAAGAAAGATAAATGGAGAA
GGAAAACCCAAAGCAATGTCAGAGTTGACAAAACCGCAATGGCACTTTATATGTGGCCCGTGGTGAGTGAGCTGTTTAGGCCTTGCCGGACTCCTCGCAG
CCCGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCATGTTGTCGAATCCGATGATGCGGACGTACGCGTCAGGGTACTCCTTCTTGACCT
CTTCCACCTCGTTGATCACCTGTGTGGCCATCACGGTGGGGGCCATGGCTG