Detailed information on CNT30721717


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187858Triticum speltaSecale cereale79.8968.4291.38429forward
CNT30224296Triticum speltaHordeum vulgare67.9770.4690.14365forward
CNT30393271Triticum speltaTriticum turgidum78.5869.8799.29422forward
CNT30684663Triticum speltaTriticum urartu56.2462.0199.34302forward
CNT30556718Triticum speltaPanicum hallii16.9520.3195.691forward

Expression of CNT30721717

SRR9114152: 81.64 RPKM

Peptides detected in this lncRNA

>peptide 1 (73 aa)
GFPPPSAPSPYKYEARAPAVNNLSSSTHRRRRRRRRREQESETDSAAAMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 2 (33 aa)
MRLWLWKLPYLCLVKFSCLILVWLCSRTEFYVM*

Sequence

>CNT30721717
GGGTTTCCCCCCCCTTCAGCACCCAGCCCGTATAAGTACGAGGCGAGAGCCCCCGCCGTCAACAATCTAAGTTCGTCCACACACCGCCGCCGCCGCCGCC
GCCGCCGCCGCGAACAGGAGAGCGAGACCGACTCCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGAGGCTCAAGAGGAAGCGCCGAAA
GATGAGGCAGCGATCCAAGTAGGCGCCTTGGAGGGAGGGGAAGCATCATCTGACATCCAGGCAGCGAAACTCTGAGGGATGATGGCATTGTCCCAGTGAA
TCCTGATTTGTTATGCGGTTGTGGCTGTGGAAGTTGCCTTACCTGTGTTTGGTCAAATTTAGCTGTTTAATACTAGTCTGGCTATGTTCCAGGACTGAGT
TTTATGTAATGTGAGGATTATATGTGTTTGTGACTGAATTTTATGCACCTATTATCCTTGAGGTACTCCGAATTGTGCCTTTTGGCCCTGCATTTGTTGT
GTCAGTTATTTTATCTTTTTGCGGTGTGACAGCTCCT