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Detailed information on CNT30721611

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697843	Triticum spelta	Oryza sativa	48.59	7.15	99.11	224	forward
CNT30678576	Triticum spelta	Setaria viridis	34.49	31.42	93.08	159	forward
CNT30524653	Triticum spelta	Setaria italica	37.74	14.52	100	174	reverse complement
CNT30548882	Triticum spelta	Ipomoea triloba	48.59	8.5	99.11	224	reverse complement
CNT30632593	Triticum spelta	Vigna unguiculata	48.59	13.27	99.55	224	reverse complement
CNT30504983	Triticum spelta	Nicotiana attenuata	48.59	12.3	98.66	224	reverse complement
CNT30304298	Triticum spelta	Triticum aestivum	51.84	9.03	99.58	239	forward
CNT30221574	Triticum spelta	Hordeum vulgare	48.59	19.41	99.55	224	forward
CNT30400948	Triticum spelta	Triticum turgidum	51.84	9.56	99.58	239	forward
CNT30585815	Triticum spelta	Musa acuminata	48.59	9.23	97.77	224	reverse complement
CNT30234810	Triticum spelta	Brassica oleracea	48.59	29.59	95.09	224	forward
CNT30147394	Triticum spelta	Medicago truncatula	48.59	11.24	99.55	224	reverse complement
CNT30435015	Triticum spelta	Aegilops tauschii	50.98	20.85	99.57	235	forward
CNT30248040	Triticum spelta	Avena sativa	48.59	16.64	99.55	224	forward
CNT30662061	Triticum spelta	Triticum dicoccoides	51.84	12.45	99.58	239	forward
CNT3081478	Triticum spelta	Brassica juncea	26.9	10.71	95.16	124	reverse complement
CNT30143344	Triticum spelta	Lolium perenne	48.59	10.01	99.55	224	forward
CNT3016633	Triticum spelta	Zea mays	48.59	11.72	99.55	224	forward
CNT30229838	Triticum spelta	Ananas comosus	42.95	44.7	98.48	198	forward
CNT30218527	Triticum spelta	Kalanchoe fedtschenkoi	48.59	15.04	99.55	224	forward
CNT30655385	Triticum spelta	Rosa chinensis	48.59	9.51	99.55	224	reverse complement
CNT30203595	Triticum spelta	Helianthus annuus	48.59	12.23	96.88	224	reverse complement
CNT30682017	Triticum spelta	Triticum urartu	48.59	27.65	99.55	224	reverse complement
CNT30366518	Triticum spelta	Sorghum bicolor	24.73	35.19	92.98	114	forward
CNT30369805	Triticum spelta	Oryza glumipatula	48.59	15.62	96.43	224	reverse complement
CNT30154718	Triticum spelta	Prunus persica	40.56	26.98	98.4	187	reverse complement
CNT30418817	Triticum spelta	Papaver somniferum	22.34	48.58	95.15	103	reverse complement
CNT3058255	Triticum spelta	Amborella trichopoda	21.48	1.8	87.88	99	forward
CNT30323793	Triticum spelta	Asparagus officinalis	27.11	39.56	96	125	reverse complement
CNT3037914	Triticum spelta	Cucumis melo	38.39	8.32	93.79	177	reverse complement
CNT30151602	Triticum spelta	Brachypodium distachyon	52.71	48.5	94.24	243	forward
CNT30104648	Triticum spelta	Oryza rufipogon	25.6	20.24	98.31	118	forward
CNT30575706	Triticum spelta	Oryza barthii	48.59	9.19	98.66	224	reverse complement
CNT30582488	Triticum spelta	Echinochloa crusgalli	48.59	18.45	99.55	224	reverse complement
CNT30116696	Triticum spelta	Oryza nivara	48.59	5.65	99.55	224	forward
CNT30604605	Triticum spelta	Oryza punctata	18.66	37.23	91.86	86	forward

Expression of CNT30721611

SRR9114152: 76.54 RPKM

Peptides detected in this lncRNA

>peptide 1 (57 aa)
DLTSSPPSSSISLAVPRECGTHLFLCFGVGRVLLPLRSTPFSGLHAESSSAANSTSS*

>peptide 2 (40 aa)
MPSLPPPPTRRRRNQFQPNLHAHWYFDVTIGRSPWLLARS*

>peptide 3 (50 aa)
MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG*

Sequence

>CNT30721611
GGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCACTGGCAGTCCCTCGTGAGTGCGGCACGCACCTTTTTCTTTGTTTCGGAGTGGGGCGCGTACTA
TTACCACTACGTTCCACACCATTTTCTGGCCTTCATGCCGAGTCTTCCTCCGCCGCCAACTCGACGTCGTCGTAACCAATTTCAACCAAACCTCCATGCT
CACTGGTACTTTGACGTCACTATAGGTAGGTCTCCGTGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTCCCTCGAGTCCTGTCATGATCGCGCACTCGAC
GAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTG
GGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCAT