Detailed information on CNT30721578


BLAST search results

BLAST vs Swiss-Prot:
sp|A0AT28|NLTP1_LENCU, E-value = 3e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555577Triticum speltaOryza glaberrima35.3138.6389.72107forward
CNT30664182Triticum speltaTriticum dicoccoides36.6340.22100111forward
CNT30148335Triticum speltaBrachypodium distachyon25.7420.4291.0378forward

Expression of CNT30721578

SRR9114152: 15.98 RPKM

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLTPHLLGMPATRSGLMPPMPLACCLRQVQVALRSAGVAHSPCPWHN*

>peptide 2 (51 aa)
ADGVGDVDATLAGDAGDEVGLDAAHAARLLLEAGAGGFAVGGGGTLTLPMA*

Sequence

>CNT30721578
GGCTGATGGCGTAGGGGATGTTGACGCCACACTTGCTGGGGATGCCGGCGACGAGGTCGGGCTTGATGCCGCCCATGCCGCTCGCCTGCTGCTTGAGGCA
GGTGCAGGTGGCTTTGCGGTCGGCGGGGGTGGCACACTCACCCTGCCCATGGCATAACTGATGCACGGGGCCAGGTAGCTCACCACCTGCCCGCAGTTCG
CAACCGCACCCTCCGCCGGCGCCGGTGCCGCAGACAGCACAAGCGCCGCCACCAGCAGGGCCAAGGTCGCGGCGGCGTGGGCACGGCGAGCTGCCATGGC
AGA