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Detailed information on CNT30721558


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 7e-45

BLAST vs NONCODE:
NONZMAT000139, E-value = 9e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692288Triticum speltaOryza sativa98.2144.5391.36220forward
CNT30671877Triticum speltaSetaria viridis81.791.589.07183forward
CNT30522081Triticum speltaSetaria italica98.213892.27220forward
CNT30180108Triticum speltaSecale cereale90.1892.2489.11202forward
CNT30289434Triticum speltaTriticum aestivum96.8837.4888.48217forward
CNT30221546Triticum speltaHordeum vulgare91.9690.3588.83206forward
CNT30392320Triticum speltaTriticum turgidum88.8499.5100199forward
CNT30554471Triticum speltaOryza glaberrima98.6640.1187.78221forward
CNT30439818Triticum speltaAegilops tauschii94.6470.999.06212forward
CNT30249006Triticum speltaAvena sativa99.5525.6391.93223forward
CNT30658643Triticum speltaTriticum dicoccoides96.4348.7687.04216forward
CNT30444735Triticum speltaSaccharum spontaneum97.7738.3591.78219forward
CNT30684370Triticum speltaTriticum urartu73.2155.4197.56164forward
CNT30341741Triticum speltaEragrostis tef83.9331.0288.3188forward
CNT30361377Triticum speltaSorghum bicolor98.2119.5487.73220forward
CNT30596661Triticum speltaOryza meridionalis99.1162.0187.84222forward
CNT30369862Triticum speltaOryza glumipatula94.295.9191211forward
CNT30106627Triticum speltaOryza longistaminata87.0596.0691.79195forward
CNT30148227Triticum speltaBrachypodium distachyon74.5566.2785.03167forward
CNT30102585Triticum speltaOryza rufipogon98.2162.588.64220forward
CNT30575680Triticum speltaOryza barthii98.2188.3591.36220forward
CNT30496422Triticum speltaDigitaria exilis83.4830.3187.7187forward
CNT30116256Triticum speltaOryza nivara98.2196.9291.82220forward
CNT30593977Triticum speltaEragrostis curvula98.2199.188.18220forward
CNT30604388Triticum speltaOryza punctata63.3942.7790.14142forward
CNT30556620Triticum speltaPanicum hallii10022.7688.39224forward
CNT30551356Triticum speltaOryza brachyantha64.7341.9188.28145forward

Expression of CNT30721558

SRR9114152: 0.0 RPKM

Peptides detected in this lncRNA

>peptide 1 (36 aa)
GGSSSAGCRPRTTSTARGRCRRERRRAPCRRGERQS*

>peptide 2 (73 aa)
EDLPALVVALAPLPQHEGGAVANAAVLLVAVESVKVEADVVHHANAAEALADVAALRPHHGLVEVLRVEWHELH

>peptide 3 (73 aa)
RIFQRWLSPSHHFHSTREVPSRTPPCSLSPWRASKLRRMLFTMRMQRKPLPTSPLSVHITDSSRYSGLNGTSFT

Sequence

>CNT30721558
GGAGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCACAGCACGAGGGAGGTGCCGTCGCGAACGCCGCCGTGCTCCTTGTCGCCGTGGAGAGC
GTCAAAGTTGAGGCGGATGTTGTTCACCATGCGAATGCAGCGGAAGCCCTTGCCGACGTCGCCGCTCTCCGTCCACATCACGGACTCGTCGAGGTACTCC
GGGTTGAATGGCACGAGCTTCACC