Detailed information on CNT30721394


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520517Triticum speltaSetaria italica47.5741.2388.98127forward
CNT30287058Triticum speltaTriticum aestivum33.3325.5787.6489forward
CNT30553080Triticum speltaOryza glaberrima49.0647.6489.31131forward
CNT30436477Triticum speltaAegilops tauschii46.4440.7987.9124forward
CNT30658727Triticum speltaTriticum dicoccoides47.5718.3585.83127forward
CNT30446776Triticum speltaSaccharum spontaneum76.7866.7888.29205forward

Expression of CNT30721394

SRR9114152: 96.31 RPKM

Peptides detected in this lncRNA

>peptide 1 (64 aa)
RVGLAEGVLDGETSGLVDDGEGGVTFLVLDLGAEAHVLEPVLVGWLPPPAAGALAGGFWPWWPW*

>peptide 2 (88 aa)
TGWDWPRECLTARPVALLTMAKAGLPSSSLIWVLKRMSLNQCWWAGCRRRRPERWQGGSGHGGRGDRSRTCCDLSGVCGTEGERFWTGR

Sequence

>CNT30721394
ACCGGGTGGGACTGGCCGAGGGAGTGCTTGACGGCGAGACCAGTGGCCTTGTTGACGATGGCGAAGGCGGGGTTACCTTCCTCGTCCTTGATCTGGGTGC
TGAAGCGCATGTCCTTGAACCAGTGCTGGTGGGCTGGTTGCCGCCGCCGGCGGCCGGAGCGTTGGCAGGGGGGTTCTGGCCATGGTGGCCGTGGTGACCG
AAGCCGAACATGCTGTGATCTCTCGGGGGTTTGCGGGACAGAAGGAGAAAGGTTCTGGACGGGGCGA