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Detailed information on CNT30721366


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQF7|RS16_ORYSJ, E-value = 2e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696918Triticum speltaOryza sativa60.1261.9285.76309forward
CNT3043803Triticum speltaPrunus dulcis25.492580.92131forward
CNT30295032Triticum speltaTriticum aestivum45.1444.44100232forward
CNT30391876Triticum speltaTriticum turgidum36.7784.3894.18189forward
CNT30555564Triticum speltaOryza glaberrima60.1269.7586.41309forward
CNT30438780Triticum speltaAegilops tauschii64.441.2294.86331forward
CNT30247768Triticum speltaAvena sativa55.6447.0485.66286forward
CNT30663140Triticum speltaTriticum dicoccoides71.2153.0493.99366forward
CNT30472632Triticum speltaSaccharum spontaneum48.055.0587.85247forward
CNT30136796Triticum speltaLolium perenne28.421.3888.36146forward
CNT30232050Triticum speltaAnanas comosus26.2611.8581.48135forward
CNT30625853Triticum speltaDaucus carota27.6311.0680.28142forward
CNT30365247Triticum speltaSorghum bicolor50.193887.21258forward
CNT30620437Triticum speltaCajanus cajan27.2419.6482.86140forward
CNT30151249Triticum speltaBrachypodium distachyon49.4248.7588.98254forward
CNT30104226Triticum speltaOryza rufipogon60.1264.6485.76309forward
CNT30581659Triticum speltaEchinochloa crusgalli32.125.6285.45165forward
CNT30117820Triticum speltaOryza nivara60.1239.6285.76309forward

Expression of CNT30721366

SRR9114152: 20.18 RPKM

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSMSLKRDLPARRIGSKAFRRSISGRMSSMGAPLTLMRPRPGLQ*

Sequence

>CNT30721366
TTCAGTTTCATCATTAACATAAGATTATGATAGCAAAACCCCTTCGTCAACTAGGCAGGATACTGCAGACAACTCACAGTTCTTAGAGATCATATCCAAT
TCATTGGTTCAAAAGAAAACAAACTACTAGCGGTAAAAGGTAGATAGATAGGCGACGAGAGACTTCGCGATGGCCTGGCGGATGGAGTAGATCTGGCTCG
TCTTCCCTCCGCCGCGGACGCGGATACGCATGTCGATGTCCTTGAAGCGGGACCTGCCGGCGAGAAGGATCGGCTCGAAGGCCTTCAGGCGGAGCATCTC
GGGGCGGATGAGCTCGATGGGGGCGCCGTTGACCTTGATGAGGCCGCGCCCGGGTTTGCAGTAGGCCACGGCGACGGCGGTCTTCTTCCGGCCGAAGCAC
TGGACGGTGCCCGGCGTCGGGCGGGTGAGAACGGCTGCCATGGTGGCTGCGGCGGTGTGCTTGGTTGCTGTGAGCGCGGCGGCGCAGGTTAGGGTTTTTG
GTGGCGGCGCGTAG