Detailed information on CNT30721365


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10M12|40C1_ORYSJ, E-value = 3e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672021Triticum speltaSetaria viridis47.5617.4993.16117forward
CNT30252195Triticum speltaAvena sativa43.525.7291.59107forward
CNT30596665Triticum speltaOryza meridionalis47.5624.4888.03117forward

Expression of CNT30721365

SRR9114152: 0.0 RPKM

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MRLLCLMSLNQCWYSSRGLGGSGHGGRGDRSRTCCDLSGVCGTEGERFWTGR

>peptide 2 (57 aa)
RVALALGVLDGLACHLVDEGEGRVAFLILDAVAVPHVLEPVLVLVAGVGGFWPWWPW*

Sequence

>CNT30721365
ACCGGGTGGCCCTCGCCTTGGGAGTGCTTGATGGCCTCGCCTGTCACCTTGTTGACGAGGGCGAAGGCCGGGTAGCCTTCCTCATCCTTGATGCGGTTGC
TGTGCCTCATGTCCTTGAACCAGTGCTGGTACTCGTCGCGGGGGTTGGGGGGTTCTGGCCATGGTGGCCGTGGTGACCGAAGCCGAACATGCTGTGATCT
CTCGGGGGTTTGCGGGACAGAAGGAGAAAGGTTCTGGACGGGGCGA