Detailed information on CNT30721254


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696959Triticum speltaOryza sativa21.1851.388.98118forward
CNT30677059Triticum speltaSetaria viridis13.6421.1797.3776forward
CNT30184672Triticum speltaSecale cereale33.2156.0695.68185forward
CNT30295002Triticum speltaTriticum aestivum40.9344.19100228forward
CNT30223445Triticum speltaHordeum vulgare72.7195.5293.83405forward
CNT30390938Triticum speltaTriticum turgidum53.3256.57100297forward
CNT30439786Triticum speltaAegilops tauschii44.8871.0294.8250forward
CNT30256287Triticum speltaAvena sativa32.541.887.85181forward
CNT30662940Triticum speltaTriticum dicoccoides56.9181.0799.68317forward
CNT30137065Triticum speltaLolium perenne44.8854.788.8250forward
CNT307240Triticum speltaZea mays20.1127.8683.93112forward
CNT30344884Triticum speltaEragrostis tef21.0150.8785.47117forward
CNT30365250Triticum speltaSorghum bicolor19.3933.5485.19108forward
CNT30150882Triticum speltaBrachypodium distachyon18.4931.3189.32103forward
CNT30117797Triticum speltaOryza nivara21.3618.0388.24119forward
CNT30551757Triticum speltaOryza brachyantha13.1124.4194.5273forward

Expression of CNT30721254

SRR9114152: 162.73 RPKM

Peptides detected in this lncRNA

>peptide 1 (37 aa)
KESIWFLTMMKTISEITQVAVVRYSHQKSERSCFFCP*

>peptide 2 (53 aa)
KRVNLVFNDDENHFRNYSSSSGPILPSEIRTVMFLLPLIIYTYGTFVLSNFSR*

Sequence

>CNT30721254
AAAAGAGTCAATCTGGTTTTTAACGATGATGAAAACCATTTCAGAAATTACTCAAGTAGCAGTGGTCCGATACTCCCATCAGAAATCAGAACGGTCATGT
TTCTTCTGCCCTTGATAATTTACACGTACGGCACATTCGTACTCTCAAACTTTTCCCGGTAAAATTCACACAGCACATGCTGCTGCATCGCGCGCACGCA
GCTGATCATCAGCAACCGACGGCGGCGGACGGGCAATAAACGGCCAGCTCACAGGCTGGGCACCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTG
TTGCCGAAGGGGTCGCTGAGGTGGCCACGGGGGCGGGCTTCGGCTTCGGGGCGGGCTTCTTCTTGAAGCGATCAAAGAGGGAGACGATCTTCTGTGCGCC
AGCAGTTGGTGCCGCTGTGGCGTACCTGGAGGAGCCGGCGAAGTTGAGCCGGGTGCCGAGCATCTTCGTCGGAGCGAGCGCCGCCATTGCCTCGAGCCCA
AAGTTGAGGGAGAAGGGGCGTGCTCAGCTCAGCAAGAAGGGAGGATGTGATGGGTGG