Detailed information on CNT30721247


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY4|METE2_ORYSJ, E-value = 9e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673222Triticum speltaSetaria viridis56.5747.0791.25297forward
CNT30521178Triticum speltaSetaria italica20.3821.8890.65107forward
CNT30513228Triticum speltaJuglans regia48.7632.981.25256forward
CNT30375849Triticum speltaArabidopsis thaliana54.4825.5480.07286forward
CNT30403349Triticum speltaBeta vulgaris36.7655.4682.9193forward
CNT30504596Triticum speltaNicotiana attenuata30.125.6982.91158forward
CNT30249492Triticum speltaAvena sativa29.1444.8789.54153forward
CNT30136078Triticum speltaLolium perenne38.6778.3891.13203forward
CNT30282Triticum speltaZea mays18.2931.5893.7596forward
CNT30650401Triticum speltaRosa chinensis55.6233.1482.88292forward
CNT30211728Triticum speltaHelianthus annuus24.9549.6282.44131forward
CNT30367469Triticum speltaSorghum bicolor56.7642.7590.6298forward
CNT3027382Triticum speltaPopulus trichocarpa47.6251.6581.2250forward
CNT30148668Triticum speltaBrachypodium distachyon38.6766.5691.13203forward
CNT30118099Triticum speltaOryza nivara52.5733.8789.86276forward

Expression of CNT30721247

SRR9114152: 59.83 RPKM

Peptides detected in this lncRNA

>peptide 1 (68 aa)
DAQQFSTPFITATRHKLKTAQPPNIDTTCQHITVYRSKTSLAKHRRYDKESDYSKQMWIIWHSVPTKQ*

>peptide 2 (35 aa)
CTTIFNSLYNRNETQAQDRTATKHRYNMSTHNSLP*

Sequence

>CNT30721247
GATGCACAACAATTTTCAACTCCCTTTATAACCGCAACGAGACACAAGCTCAAGACCGCACAGCCACCAAACATAGATACAACATGTCAACACATAACAG
TTTACCGTAGCAAGACTAGCCTAGCGAAACACCGGCGGTACGATAAAGAATCGGATTATTCGAAACAAATGTGGATCATTTGGCACTCTGTCCCCACAAA
ACAATAGGCAGTAGTATCAGGGCGGGCTTCACCTCCGTGTACTTGCGGGTCTTGAGGCCGCAGTCAGGGTTCACCCACAGGATGTTGGTGTCGAGGACCG
CGAGCATCTTGTTGACGCGGTCGGCAATCTCCTCCGTGGAGGGGATCCTGGGGGAGTGGATGTCATAGACGCCTGGGCCAATGCCGGCTCCGTAGGTCAC
GCCCTCACGGAAGACCGACAGGAGCTTCTCGTCGGAGCGGGAGTTCTCAATGGTGATGACGTCGGCGTCCATGTTGATGATGGAGTGGATGATATCGTTG
AAGTTGGAGTAGCACAATGAAGTGG