Detailed information on CNT30721242


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 2e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523110Triticum speltaSetaria italica32.2940.6881.94299forward
CNT30552039Triticum speltaOryza glaberrima10.4833.2290.7297forward
CNT30457661Triticum speltaSaccharum spontaneum30.4525.3482.98282forward

Expression of CNT30721242

SRR9114152: 0.92 RPKM

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MTGTGVGSVEGAKPLPLAGERVADLGRPFAPLAEAHPTVALGAAGGAGSDGRSRGGRSDRLGKHLGRRGLAKEQLEAALGRSR

>peptide 2 (30 aa)
MRTYFSFSFILLGATATRLVLSQLQCLDQH*

>peptide 3 (41 aa)
MPRPKSQPGISRKSSPMSRSMSSSRSSSARSPSSRSCSPSK*

>peptide 4 (82 aa)
NANLFFFFIHTTRSNSHKTCLEPATMSGPTLTGNIKEEHNITSSYYNLSQCNLLSKILSHSHHHNANVLGRLGKTDTILGTS*

Sequence

>CNT30721242
AATGCGAACTTATTTTTCTTTTTCATTCATACTACTAGGAGCAACAGCCACAAGACTTGTCTTGAGCCAGCTACAATGTCTGGACCAACATTGACAGGTA
ACATAAAAGAGGAACATAACATAACCAGCAGCTACTATAACTTATCACAATGTAACCTACTATCAAAAATACTCTCTCACTCTCACCACCATAACGCTAA
TGTGCTTGGGAGACTAGGGAAAACAGACACCATCTTGGGCACGAGCTGATTGAGCTGCCCGGGGAAAAACCCAAGAGGATATCCTCCCTCCCAATGCACA
CGGATTACACTCACAGGAGGCCCATCACACCAGCATTACTTAAAGATAAACCTTAAACCTCTCTTAATTCACACGCAGAAATCGACGGTTTGCAGGAAAT
CATCCATGCCCCGGCCAAAGTCGCAGCCAGGCATCTCCAGGAAGTCGTCGCCGATGTCGAGGTCCATGTCCAGCTCGAGGTCCTCGTCGGCCAGGTCACC
GAGCAGCAGATCCTGTTCGCCGTCCAAGTAAGCCGACGCCTCGGAGACGTCCAAGGCATCAAGCCCGGCGCGGAAGTCCATCGGGTCGATGTCCGGCAGC
TGGAGACCACGCAGGAGGTCCTGGTAGAACTCTGGGTCGTCAGGAAGCTGCGCAGTCTCAGCCGTGGTGGACAACATGACGGGAACTGGGGTCGGCAGTG
TCGAAGGTGCCAAGCCACTCCCTCTTGCCGGAGAACGGGTTGCGGATCTCGGCCGCCCATTTGCCCCACTTGCGGAGGCGCACCCCACGGTGGCCCTCGG
CGCTGCTGGTGGTGCAGGCAGCGACGGCAGAAGCCGCGGCGGTCGGAGTGACCGGCTTGGCAAACACCTTGGCCGGCGGGGCCTTGCCAAGGAACAGCTC
GAAGCAGCGCTTGGACGAAGCAGGGG