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Detailed information on CNT30721163


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002454, E-value = 4e-163

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30156864Triticum speltaPistacia vera34.4324.1395.49355reverse complement
CNT30234026Triticum speltaBrassica oleracea36.3794.4693.87375reverse complement
CNT30363889Triticum speltaSorghum bicolor23.4752.2794.21242reverse complement
CNT30106724Triticum speltaOryza longistaminata63.9274.1399.09659forward
CNT30118490Triticum speltaCitrus clementina9.0220.9993.5593forward
CNT30550626Triticum speltaOryza brachyantha29.29103.0791.06302reverse complement

Expression of CNT30721163

SRR9114152: 25.88 RPKM

Peptides detected in this lncRNA

>peptide 1 (52 aa)
RPTKIGYSWFSAKSISVERMMSMARGRALNGLGWPPFRFTNPMETPNTGRHP*

>peptide 2 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKRRDLESSFFKCQ*

>peptide 3 (49 aa)
MSAKAVALPYTRIRFLAGADTDFSLKAKKKKWANTRPSGRTCRLRLRAPS

>peptide 4 (45 aa)
MSNEKSCEKHDRLPVEGFLRSVNLRRVNRSLRNPRKGCRPMGTRK*

Sequence

>CNT30721163
AAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGG
TGGCCCCCATTTCGCTTTACCAACCCCATGGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTGATTGGGTGCTAAGATCCAAAGTCGAGA
GGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGGAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGC
CATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCACCGAAAATGTCTCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAG
CAGCTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTA
ACGAGAAATCCTGTGAAAAACACGATCGGCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAA
GGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACTGAACCATGCCTGGATCGTCGGAGCGAATTGGATGATCGGGCCGAGGGCTG
CCCCCTCTTCCCCTCGCTCTCCTTTCCTTAATATTCACCGTCGAGTCATCAAAGCCGTCAACTAATTCAAAGGGGCTCGGCTGGCCCGGTCGCCCTACGC
TACTGGCGCTTCCAAAGGCGAAGCTCTCGTCTTTGGCGACCAGCAAACGGAGGGCTAAAACCTGTAGTTTTGAAGCAAGGGATGAGCGCGAAAGCCGTTG
CGCTTCCGTACACGCGCATACGTTTTCTTGCTGGGGCGGACACGGATTTCTCTCTAAAGGCGAAGAAAAAGAAGTGGGCGAACACTCGGCCCAGCGGGCG
AACATGCCGGCTCCGGCTCCGCGCACCTTCT