Detailed information on CNT30721065


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS3|TBB6_ORYSJ, E-value = 3e-48

BLAST vs NONCODE:
NONPOPT001745, E-value = 2e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674787Triticum speltaSetaria viridis66.0723.4292.57148forward
CNT30522590Triticum speltaSetaria italica42.415.6888.4295forward
CNT30727960Triticum speltaCorchorus capsularis59.8226.7581.34134forward
CNT30380834Triticum speltaManihot esculenta71.4337.5683.12160forward
CNT30388443Triticum speltaTriticum turgidum47.3235.6997.17106forward
CNT3062349Triticum speltaArabidopsis lyrata58.9315.1585.61132forward
CNT30684516Triticum speltaTriticum urartu42.4136.1289.4795forward
CNT30364150Triticum speltaSorghum bicolor85.275090.58191forward
CNT30426941Triticum speltaPapaver somniferum56.722.0581.1127forward
CNT30573622Triticum speltaVitis vinifera66.5254.7879.87149forward
CNT3022287Triticum speltaPopulus trichocarpa98.2153.5381.82220forward

Expression of CNT30721065

SRR9114152: 0.0 RPKM

Peptides detected in this lncRNA

>peptide 1 (73 aa)
TVLSLLPHNIQNRIDKLSTLGVVALGPVVTGTRLPKDEVVRAEDLPIRASADTVHGTRLKVHKNSPGHKATTGG

Sequence

>CNT30721065
ACAGTTCTCAGCCTCCTTCCTCACAACATCCAAAACAGAATCGATAAGCTCAGCACCCTCGGTGTAGTGGCCCTTGGCCCAGTTGTTACCGGCACCAGAT
TGCCCAAAGACGAAGTTGTCAGGGCGGAAGATCTGCCCATAAGGGCCAGTGCGGACACTGTCCATGGTACCAGGCTCAAGGTCCATAAGAACAGCCCGGG
GCACAAAGCGACCACAGGAGGCCT