Detailed information on CNT30720996


BLAST search results

BLAST vs Swiss-Prot:
sp|P25862|TBB1_AVESA, E-value = 6e-45

BLAST vs NONCODE:
NONGMAT000204, E-value = 1e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3092760Triticum speltaSolanum tuberosum40.6514.4586100forward
CNT30291318Triticum speltaTriticum aestivum52.8539.0496.92130forward
CNT30223001Triticum speltaHordeum vulgare44.7239.5797.27110forward
CNT30390564Triticum speltaTriticum turgidum43.935.5399.07108forward

Expression of CNT30720996

SRR9114152: 1.8 RPKM

Peptides detected in this lncRNA

>peptide 1 (63 aa)
VGDPLNKVGRVLVLDVDHLLVHLLCAHLSTEHGRGGEVTAMARERDKVHCQLPEVGIQLTREP*

Sequence

>CNT30720996
TGTTGGGGATCCACTCAACAAAGTAGGACGAGTTCTTGTTCTGGACGTTGATCATCTGCTCGTCCACCTCCTTTGTGCTCATCTTTCCACGGAACATGGC
AGAGGCGGTGAGGTAACGGCCATGGCGAGGGAACGGGATAAGGTTCACTGCCAGCTTCCGGAGGTCGGAATTCAGCTGACCAGGGAACCTTAGGCAGCAG
GTGACTCCACTCATGGTAGCAGAGATTAGATGGTTCAAGTCCCCAA