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Detailed information on CNT30720963


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 1e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673014Triticum speltaSetaria viridis56.1956.588.18313forward
CNT30520920Triticum speltaSetaria italica56.1945.1788.18313forward
CNT30639966Triticum speltaNymphaea colorata23.78.7983.33132forward
CNT30533956Triticum speltaEucalyptus grandis22.2617.7783.87124forward
CNT30516978Triticum speltaJuglans regia34.1127.8680190forward
CNT30698134Triticum speltaQuercus lobata25.497.6280.28142forward
CNT30629841Triticum speltaVigna unguiculata23.5222.3983.21131forward
CNT30712288Triticum speltaGlycine max25.4924.6182.39142forward
CNT30182270Triticum speltaSecale cereale51.7152.1788.89288forward
CNT30292897Triticum speltaTriticum aestivum100.3694.9197.32559forward
CNT30222663Triticum speltaHordeum vulgare35.9139.5391200forward
CNT30390478Triticum speltaTriticum turgidum76.335.65100425forward
CNT30564216Triticum speltaActinidia chinensis25.1362.7885140forward
CNT3084712Triticum speltaVigna radiata26.0351.2483.45145forward
CNT30438727Triticum speltaAegilops tauschii36.864.8794.63205forward
CNT30249136Triticum speltaAvena sativa51.5357.9891.29287forward
CNT30662078Triticum speltaTriticum dicoccoides30.5258.6297.06170forward
CNT30454500Triticum speltaSaccharum spontaneum35.7354.9787.44199forward
CNT30135064Triticum speltaLolium perenne48.8347.6488.97272forward
CNT3014188Triticum speltaZea mays55.6640.5886.45310forward
CNT30129085Triticum speltaCorymbia citriodora22.2611.7885.48124forward
CNT30683149Triticum speltaTriticum urartu25.1331.697.14140forward
CNT30344813Triticum speltaEragrostis tef48.2951.4388.1269forward
CNT30319122Triticum speltaAsparagus officinalis24.429.288.97136forward
CNT3037642Triticum speltaCucumis melo17.4136.682.4797forward
CNT30104607Triticum speltaOryza rufipogon17.4127.0290.7297forward
CNT30578384Triticum speltaOryza barthii23.8833.9388.72133forward
CNT30582394Triticum speltaEchinochloa crusgalli24.9637.2792.09139forward
CNT30604850Triticum speltaOryza punctata22.9813.1888.28128forward
CNT30556884Triticum speltaPanicum hallii24.9619.1594.96139forward
CNT30551896Triticum speltaOryza brachyantha56.3747.3689.81314forward
CNT3040359Triticum speltaMarchantia polymorpha23.1617.2281.4129forward

Expression of CNT30720963

SRR9114152: 80.04 RPKM

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MDSLKQPPSGRDHMICTHRTCMPIINLLEEVWEVEHVEEEVGPGGTGDTTEEEASGELRPPFSGLQLVGLLLAACERECGRG*

>peptide 2 (35 aa)
DCEECVNSFIHGLFEATTIGKRSHDLHPSYMHANN*

Sequence

>CNT30720963
GATTGTGAGGAATGTGTAAATTCATTTATACATGGACTCTTTGAAGCAACCACCATCGGGAAGAGATCACATGATCTGCACCCATCGTACATGCATGCCA
ATAATTAATCTACTTGAAGAAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAGGCCCAGGTGGCACCGGAGACACCACCGAAGAAGAAGCCTCCGGTG
AACTGCGACCACCCTTCAGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCTGTGAGCGTGAGTGCGGGCGCGGTTGACGGTGCGCCCTCGTTGAAGG
ACGCGACACCGTACATGGTGAGGCAGACGCTAAGGATGGAGACGAGGCCGATGGCGCCGAGAGTGCCTGCCTGGCCGTGAATTGGCGTGTTGCGGAGCGG
GCCGGTGAGCGCGAAGGGGCCGACCTCGATGCCGCGGAGGAGCGGGCTGACGGCGGTGCGGTAGGCGGGGAGGTTTGAGAGGTACCAGGCGACGAGGGGG
CTGGAGGTGACGGGCGTCTCCAGGCTGCCGATGAATGGGTCGCCGTTGATGGGCTGG