Detailed information on CNT30720909


BLAST search results

BLAST vs Swiss-Prot:
sp|P68430|H32_ONOVI, E-value = 1e-84

BLAST vs NONCODE:
NONBRAT001321, E-value = 3e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697930Triticum speltaOryza sativa61.7292.4382.38403forward
CNT30519871Triticum speltaSetaria italica57.1256.3495.17373forward
CNT30274756Triticum speltaChenopodium quinoa37.5222.7382.86245forward
CNT3069242Triticum speltaQuercus suber62.3375.9382.06407forward
CNT30709007Triticum speltaGlycine max26.0371.4384.12170forward
CNT3048083Triticum speltaPrunus dulcis62.3357.9880.59407forward
CNT30565750Triticum speltaActinidia chinensis54.9832.6783.57359forward
CNT3084175Triticum speltaVigna radiata58.1936.4779.74380forward
CNT30240007Triticum speltaAvena sativa55.2864.3595.29361forward
CNT30140729Triticum speltaLolium perenne63.476.6793.96414forward
CNT30610039Triticum speltaGossypium raimondii23.4317.3979.74153forward
CNT30686633Triticum speltaTriticum urartu15.6236.8299.02102reverse complement
CNT30368649Triticum speltaSorghum bicolor37.9859.0593.15248forward
CNT30622400Triticum speltaCajanus cajan53.1437.9289.91347forward
CNT30154413Triticum speltaPrunus persica15.9326.8786.54104forward
CNT30329187Triticum speltaDioscorea rotundata12.2520.6286.2580forward
CNT30585391Triticum speltaEchinochloa crusgalli62.6362.8394.62409forward
CNT3018856Triticum speltaCyanidioschyzon merolae30.1785.6582.74197forward

Expression of CNT30720909

SRR9114152: 634.19 RPKM

Peptides detected in this lncRNA

>peptide 1 (34 aa)
NIFSFPLLMATRRYHQIRHNTSTHHERNRDLTWI*

>peptide 2 (31 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKRPTR*

>peptide 3 (82 aa)
MSSSVLFWYLRISRSATVPGRKRWGFFTPPVAGADLRAALVASCFLGALPPVDFLAVCLVRAMSSMRRRGGGGSGGWELGRLG

Sequence

>CNT30720909
CAACATTTTTTCATTTCCATTGCTGATGGCAACAAGAAGGTACCATCAGATTAGGCATAACACATCCACCCACCATGAGAGGAACAGGGATCTAACATGG
ATCTAACACGACGCACATTCTGAAACACCACTATTTTCCACCGATGAACTCAGCCTAACACGGATTGCAGGTGCAGCAGCCTAGGCCCTCTCGCCACGGA
TGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGGCCCACGAGGTAGGCCTC
GGCGGCCTCCTGCAGGGCGGAGACGGCGGAGGACTGGAAGCGGAGGTCGGTCTTGAAGTCCTGGGCGATCTCGCGCACTAGGCGCTGGAAGGGGAGCTTG
CGGATGAGCAGCTCCGTGCTCTTCTGGTACTTGCGGATCTCGCGGAGCGCCACGGTGCCGGGGCGGAAGCGGTGGGGCTTCTTCACGCCGCCGGTGGCCG
GGGCGGACTTGCGAGCGGCCTTGGTCGCCAGCTGCTTCCTCGGCGCCTTGCCGCCGGTCGACTTCCTCGCCGTCTGCTTGGTGCGGGCCATGTCGTCGAT
GCGCCGGAGGGGAGGAGGAGGCTCTGGTGGTTGGGAGCTGGGGAGATTGGGGT