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Detailed information on CNT30720826


BLAST search results

BLAST vs Swiss-Prot:
sp|P51414|RL261_ARATH, E-value = 1e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690207Triticum speltaOryza sativa33.0562.1588.32197forward
CNT30522907Triticum speltaSetaria italica46.3148.8592.39276forward
CNT30536141Triticum speltaEucalyptus grandis2541.0582.55149forward
CNT3044269Triticum speltaPrunus dulcis24.3324.2983.45145forward
CNT30181670Triticum speltaSecale cereale45.394.4196.3270forward
CNT3082886Triticum speltaBrassica juncea18.4642.886.36110forward
CNT30230907Triticum speltaAnanas comosus25.8451.8583.12154forward
CNT30714885Triticum speltaMalus domestica golden33.7241.2781.59201forward
CNT30597158Triticum speltaOryza meridionalis57.2149.7188.86341forward
CNT30371509Triticum speltaOryza glumipatula57.2158.8989.44341forward
CNT30105031Triticum speltaOryza longistaminata56.8843.9787.91339forward
CNT30149302Triticum speltaBrachypodium distachyon53.5253.3494.98319forward
CNT30115704Triticum speltaOryza nivara13.4223.6787.580forward

Expression of CNT30720826

SRR9114152: 765.32 RPKM

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MGMDRTLYLWRSSEERAADMSTRRTEDGAVKCALRHFRRELVTRGLRFMAAAWGGLSPLPGAAAAR

>peptide 2 (30 aa)
EDFISKSNAQPHDRFTLIKVPKRHHRTSYE*

>peptide 3 (52 aa)
MATGRSTELNRSPGASLSLVTITLLGWMPTFTVDPLTFSLVIRSTWMTQRRR*

Sequence

>CNT30720826
ACGAAGACTTTATATCAAAATCCAACGCACAGCCACATGATAGATTCACATTAATAAAGGTTCCCAAACGTCACCATCGAACATCTTACGAATGATAAAG
GAGCATATTTCAGGTAGCATATCCTAACAGGACTGGTGATATTAAAAAACTAGGATAGCAAGAGCAGTATGGCAACCGGCAGATCCACCGAGCTTAATCG
ATCTCCTGGAGCGAGCTTGAGCTTGGTGACGATCACCTTGCTGGGGTGGATGCCAACGTTCACCGTGGATCCATTGACCTTCTCCCTGGTGATCCGCTCC
ACGTGGATGACCCAGCGGCGGCGGTAGACCTGCACCACCTTTCCCTCGCGGCCCTTGAAGGTGCCGCGCACGACCTGCACCTCGTCATCCTTGCGGATGG
GGATGGACCGGACATTGTATTTGTGGCGGAGCTCAGAGGAGAGGGCCGCGGACATGAGCACGCGGCGGACGGAGGACGGCGCCGTGAAGTGCGCCTTGCG
GCACTTCCGGCGGGAGCTCGTGACGCGGGGGTTGCGCTTCATGGCGGCGGCGTGGGGTGGGCTCTCTCCCTTACCTGGGGCGGCGGCGGCTAGGGT