Detailed information on CNT30720770


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670523Triticum speltaSetaria viridis28.8348.4692.49173forward
CNT30702258Triticum speltaQuercus lobata27.535.1185.45165forward
CNT30376211Triticum speltaArabidopsis thaliana26.3321.8583.54158forward
CNT30619260Triticum speltaSesamum indicum27.3315.482.93164forward
CNT3020599Triticum speltaCitrullus lanatus29.6715.4684.27178forward
CNT30380073Triticum speltaManihot esculenta21.8312.6987.79131forward
CNT30402445Triticum speltaBeta vulgaris15.3320.7283.792forward
CNT30505192Triticum speltaNicotiana attenuata2627.6184.62156forward
CNT30543653Triticum speltaBrassica napus28.3324.6484.12170forward
CNT30259492Triticum speltaBrassica rapa28.3348.4382.35170forward
CNT30607325Triticum speltaGossypium raimondii24.6711.4783.78148forward
CNT30231757Triticum speltaAnanas comosus16.6738.0288100forward
CNT30681317Triticum speltaTriticum urartu4656.3394.57276forward
CNT30705212Triticum speltaPrunus avium28.3346.283.53170forward
CNT3021984Triticum speltaPopulus trichocarpa28.838.0985.55173forward
CNT30329805Triticum speltaDioscorea rotundata24.1724.789.66145forward
CNT30151326Triticum speltaBrachypodium distachyon20.1729.888.43121forward
CNT30103876Triticum speltaOryza rufipogon31.541.7291.53189forward
CNT30117878Triticum speltaOryza nivara31.54292.59189forward
CNT30723271Triticum speltaLupinus angustifolius2659.3284.62156forward

Expression of CNT30720770

SRR9114152: 5.53 RPKM

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MEKNTTSLKPIIMPLFLGKSKRRLSQPSQGSKHNHNNKSSA*

Sequence

>CNT30720770
ATAAACAAGCATCTACGGCAATAGTCATTAAGAAACCACACAAAATATGAGCATCAGATTCCGAAGGATTTCAGACACAGTAGAACAACCGAGATAAAAC
AGCATATGGAAAAGAACACCACCTCACTTAAACCAATAATAATGCCATTATTTCTGGGCAAAAGCAAACGCCGCCTCTCCCAACCCTCACAAGGCTCAAA
ACATAACCATAATAACAAATCCTCCGCCTAAGAGACAGCATGTAAGATAATAGAAGGGAAACAGGATAGTTGATAAGAGTTCCCGTTGGTGCCGCTGCTC
CGACTCAGGCTCAGGCCAGCCGCTAGTCGTGCTGGACACACTAGTACCGGTAGGCCGCAGGCTTGTACGGACCCTCAACTGGGATGCTAATGTAGTCAGA
CTGGGACTTGGTGAGGATCTGGATGCCCTCCATCAGGGCCTGAAGGGCACAGATGGGGTCAATCTCTGTCACGATCACACGGGCACCAGCCTGCTTGAGT
GCGGCCGCACAGCCCTTGCCAACATCACCATAACCGCAGACCACGGCAACCTTGCCGGCGATCATAACATCAGTGGCCCTCATAAGACCATCAGGGAGCG