Detailed information on CNT30720672


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179357Triticum speltaSecale cereale26.9414.6498.59142forward
CNT30386304Triticum speltaTriticum turgidum49.1548.1488.8259forward
CNT3017553Triticum speltaZea mays11.5723.6491.861forward
CNT30680899Triticum speltaTriticum urartu38.1450.7695.52201forward
CNT30349408Triticum speltaEragrostis tef25.6212.2594.81135forward
CNT30596159Triticum speltaOryza meridionalis24.131.0589.76127forward
CNT30584364Triticum speltaEchinochloa crusgalli24.2925.5591.41128forward

Expression of CNT30720672

SRR9114152: 108.77 RPKM

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MAASSQVAAQLVALPTRGMELILVKASEGWAAWKSRRISSGFLGLAVLPRGLLSSCGACATCFWKMANIFTDQTSSFLLELELLLLWRRQGERRT

>peptide 2 (78 aa)
MAISDGGFVPGGGPVGGATDAGHGVDLGEGVGGVGGVEVAEDLVGVLGLGGAAARAVELLRRVRHLLLEDGQHFHRSN*

>peptide 3 (52 aa)
KTSDDSVALLDWKQSLIPPSYKQTTVRVSVPTPTHGSDQIRFRMYIAKEKNK*

Sequence

>CNT30720672
CAAAACAAGTGACGACTCGGTAGCACTCTTGGACTGGAAGCAAAGTCTTATTCCTCCATCGTACAAGCAAACAACCGTACGTGTCAGCGTGCCCACGCCC
ACACACGGCTCAGATCAGATCAGATTCAGAATGTACATTGCCAAAGAAAAAAATAAGTAAAATGCAGTAAGCCCAAATCCAGAAGTCCGACGAGCTAGGC
GAGCGTCGCCGGCGCCGGGGAGCGACGATGGCTATATCAGATGGCGGCTTCGTCCCAGGTGGCGGCCCAGTTGGTGGCGCTACCGACGCGGGGCATGGAG
TTGATCTTGGTGAAGGCGTCGGAGGGGTGGGCGGCGTGGAAGTCGCGGAGGATCTCGTCGGGGTTCTTGGGCTTGGCGGTGCTGCCGCGCGGGCTGTTGA
GCTCCTGCGGCGCGTGCGCCACCTGCTTCTGGAAGATGGCCAACATTTTCACAGATCAAACTAGTTCTTTCTTGCTCGAGCTGGAGCTGCTGCTGCTATG
GAGGCGACAGGGGGAGAGGAGAACGGG