Detailed information on CNT30720492


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 1e-73

BLAST vs NONCODE:
NONCQUT001608, E-value = 7e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672821Triticum speltaSetaria viridis54.6736.2381.82275forward
CNT30521106Triticum speltaSetaria italica54.6737.9381.82275forward
CNT30181095Triticum speltaSecale cereale62.0320.2396.47312forward
CNT30288857Triticum speltaTriticum aestivum62.0324.4798.08312forward
CNT30221752Triticum speltaHordeum vulgare62.0346.6496.79312forward
CNT30387625Triticum speltaTriticum turgidum61.0323.6399.35307forward
CNT30436411Triticum speltaAegilops tauschii62.0347.3496.79312forward
CNT30658265Triticum speltaTriticum dicoccoides61.6340.7497.1310forward
CNT30681645Triticum speltaTriticum urartu62.0321.3397.12312forward
CNT30597241Triticum speltaOryza meridionalis48.9128.2486.18246forward
CNT30371468Triticum speltaOryza glumipatula45.3319.8186.4228forward
CNT30578612Triticum speltaOryza barthii56.0624.9386.52282forward

Expression of CNT30720492

SRR9114152: 86.76 RPKM

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MHAQEPMFVHTYTKSYRTKGMLRSESRVVQQSFGQK*

>peptide 2 (61 aa)
RYRPMRNYVCMLKNLCSYIHTQNHIEQKVCSGQKAESYSRVLDKSEVHKRPSYEIGHCFNS*

Sequence

>CNT30720492
GAAGATATAGACCTATGAGGAATTACGTATGCATGCTCAAGAACCTATGTTCGTACATACATACACAAAATCATATAGAACAAAAGGTATGCTCCGGTCA
GAAAGCAGAGTCGTACAGCAGAGTTTTGGACAAAAGTGAAGTTCACAAAAGACCTTCATACGAGATAGGCCATTGTTTCAACTCGTAGTTTAGGCGATGA
AGCTGACGCACTGCACCTGGCGCAGGTTGTCGAAGCCGATGACACGGACATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTCAGCACCTG
TGTGGCGTCAGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTATCGGCCGTCGTAGTACCCGGGGGAGCTGTTGTGCTCACGGAAGACGAAGCCA
ACCTTGCTGAACTCGAGGCAGGGCACCCACTTTGAGCGGATCAGGTAGTCGACCTGTTTCAGGAGGGCCTCCGTGGATAGGGGTGGCAGGTAAGACAGGG
TCT