Detailed information on CNT30720411


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 2e-16

BLAST vs NONCODE:
NONORUT000586, E-value = 1e-126

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020470Triticum speltaCitrullus lanatus94.1562.7198.52338forward
CNT3067980Triticum speltaLeersia perrieri44.8553.4997.52161forward
CNT30484250Triticum speltaChara braunii52.6526.0394.71189forward
CNT30707286Triticum speltaPrunus avium22.5612.8293.8381reverse complement
CNT3099709Triticum speltaOryza rufipogon63.7910.52100229reverse complement

Expression of CNT30720411

SRR9114152: 239.93 RPKM

Peptides detected in this lncRNA

>peptide 1 (48 aa)
SVRRLGILRRKSGLSGLVVVCHHLPPILHIRSRLSLRSYSQGARGLTV*

Sequence

>CNT30720411
GATCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATCAAG
GTTGTCACTGCGAAGCTATAGTCAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGT
CGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTT
ACCGGGGCTTCCATTCAAAGCTTATCACACTTCTCCTTCCGACCTTCCAGCACCGGGCA