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Detailed information on CNT30720281


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30132585Triticum speltaLolium perenne14.1440.2596.9197forward
CNT30101155Triticum speltaOryza rufipogon11.0834.3994.7476forward

Expression of CNT30720281

SRR9114152: 17.22 RPKM

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MEGSTLSSYSRPREVKMVGRLTTSGRERRRRVRNETAAGPPDIVAFRGDFGTAARE*

Sequence

>CNT30720281
AGGCAAGAAATGTGCAAGCAGGCAACATCAATAAGTAGTCCTGACTGATGCAAAGCAACAACTGCAGCGTTCGAAACAATGAAATCAAACGAGCAAACAT
CATAAGCATAAGTGCGTAACTAGCATGCAAATTCAACACCACCAGAAAGCTTAACCTGACAAATCATAAGCAAGATATCCAGATCCAGACCTTATTTGGA
TCAAACTACCAGATTTTGTCCCAAGACATTCAAACTTAAAGACCTACAGCAACAGATATCATTGTCTCTCCAAACCATGGTTTAGTCCGTCATGACACAA
GATATGTTTGGGCAAGTAAAACTGGAGTGGTAAATCACCGGCCGCCGAATCCAGCAGCGTTGAGGGAGTCGCGGACGAGCGCCGAGACGTGGGGACGGTC
GGTGAGGAGCTGGTCGGCGTTGAACTGGGCAACGACGGCCTTGAGCACCTCGTTCCCGATGGAGGGGAGCACCTTGTCGTCGTACTCGAGGCCAAGGGAG
GTGAAGATGGTGGGCAGGTTGACGACGTCGGGGCGGGAGAGGAGGCGGAGGGTGAGGAACGAGACCGCCGCGGGACCGCCGGACATCGTCGCCTTCCGGG
GGGATTTCGGGACGGCGGCGCGGGAGTAAAACCCTAGCGAGGATTTGGTCTCTCGGTGCGGGCTTGGGGAGGGGAATGGGGGGTGG