Detailed information on CNT30720265


BLAST search results

BLAST vs Swiss-Prot:
sp|P50249|SAHH_PHASS, E-value = 2e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639595Triticum speltaNymphaea colorata25.3714.6288.4169forward
CNT30628366Triticum speltaVigna unguiculata40.817.7792.79111forward
CNT3096327Triticum speltaSolanum tuberosum39.3413.4684.11107forward
CNT30585997Triticum speltaMusa acuminata38.2441.1190.38104forward
CNT30510798Triticum speltaSolanum lycopersicum33.8235.5283.792forward
CNT30435910Triticum speltaAegilops tauschii32.7211.1795.5189forward
CNT30659902Triticum speltaTriticum dicoccoides47.0641.5696.88128forward
CNT308389Triticum speltaZea mays26.4733.0391.6772forward
CNT30365764Triticum speltaSorghum bicolor45.9653.1990.4125forward
CNT30354795Triticum speltaLactuca sativa22.437.2486.8961forward
CNT30570728Triticum speltaVitis vinifera33.0916.187.7890forward
CNT30645006Triticum speltaCannabis sativa30.159.9686.5982forward

Expression of CNT30720265

SRR9114152: 0.0 RPKM

Peptides detected in this lncRNA

>peptide 1 (89 aa)
GRRYTLLLVTESLTLMAGKRRGPNSARQAMRPGISTSASSSSRRPKSAWERSLTLYSRPDAVFSTESAMEERRLVDWICRGGRGVVGGGG

>peptide 2 (89 aa)
KEVYLALGDGVVDVDGGEEEGPELGAAGHEARHLDLGELELEAAEVGLGEVLDLVLPAGRGLLHGERHGGEEVGGLDLPRRERSGGRRRR

Sequence

>CNT30720265
GGAAGGAGGTATACCTTGCTCTTGGTGACGGAGTCGTTGACGTTGATGGCGGGGAAGAGGAGGGGCCCGAACTCGGCGCGGCAGGCCATGAGGCCCGGCA
TCTCGACCTCGGCGAGCTCGAGCTCGAGGCGGCCGAAGTCGGCCTGGGAGAGGTCCTTGACCTTGTACTCCCGGCCGGACGCGGTCTTCTCCACGGAGAG
CGCCATGGAGGAGAGGAGGTTGGTGGATTGGATCTGCCGAGGAGGGAGAGGAGTGGTGGGAGGAGGCGGCGA